SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108857

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene108857
GGGATTGTCATCGCAACGATTGTTCCCCCGACTAGTCATATGAGCGGGGGTAAAGATGGGCGTACCCGGCGTCCTCTGAGGGCCAGTGACATTCCATGTTATATGTGGCAAGTTGTTGTGGCATCCGAGGACCGCCGGTTCTTCGAGCACCATGGAATCGACCCTAAAGGGGTTGCCAGGGCTGCATTGTCCATGACAGCGGGTGGAGGTGGCAGTACAATTACACAGCAGTTAGTAAAGAATGTATTTCTTACAAATGAGCGCAAGTGGCACGAAAGATTGCTGAGGTG

Ace file of the UniGene sp_v3.0_unigene108857

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Penicillin-binding protein n=1 Tax=Physcomitrella patens RepID=Q3LHF4_9BRYO	-	-	3.0e-23	54%
FL-Next	tr=Putative uncharacterized protein GT51A1; Selaginella moellendorffii (Spikemoss).	-	-	0.0	63%
Sma3	Penicillin-binding protein	-	-	3.52e-10	-

Source	Gene names
Sma3	GSVIVT00015350001; PBP; PHYPADRAFT_85755;

Source	GOs	Term	Type	Identity
Sma3	peptidoglycan-based cell wall	GO:0009274	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	penicillin binding	GO:0008658	Molecular Function	-
Sma3	transferase activity, transferring pentosyl groups	GO:0016763	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Penicillin-binding protein, transpeptidase	IPR001460	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Penicillin-binding protein 1A	IPR011816	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R6S4

Fln msg: Distance to subject end: 659 aas, your sequence is shorter than subject: 96 - 918

Fln protein: GIVIATIVPPTSHMSGGKDGRTRRPLRASDIPCYMWQVVVASEDRRFFEHHGIDPKGVARAALSMTAGGGGSTITQQLVKNVFLTNERKWHERLLR

Protein Length: 97

Fln nts: GGGATTGTCATCGCAACGATTGTTCCCCCGACTAGTCATATGAGCGGGGGTAAAGATGGGCGTACCCGGCGTCCTCTGAGGGCCAGTGACATTCCATGTTATATGTGGCAAGTTGTTGTGGCATCCGAGGACCGCCGGTTCTTCGAGCACCATGGAATCGACCCTAAAGGGGTTGCCAGGGCTGCATTGTCCATGACAGCGGGTGGAGGTGGCAGTACAATTACACAGCAGTTAGTAAAGAATGTATTTCTTACAAATGAGCGCAAGTGGCACGAAAGATTGCTGAGGTG

Fln Alignment:

AllPine_a_c41984___GIVIATIVPP--TSHMSGGKDGRTRRPLRASDIPCYMWQVVVASEDRRFFEHHGIDPKGVARAALSMTAGGGGSTITQQLVKNVFLTNERKWHER
D8R6S4________________GEVIATLVPGGYIGKRDPLKTSASTGPLRPSDIPSAMWQAVVASEDRRFFEHHGIDPRGISRAVLTLSSSGGGSTITQQLVKNLFLTNERKWSRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain