SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108553

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene108553
CGTCGTGACCTTGGCTGTCACTCAAGGGAAAGGGAAAGGCAATAGAAATATAAACCCTGTTGGATTGCTACGTGATTGCATACTCAGCTCACGGCTCAATGGATCCTCATCGTCCATCCTATCACAACTATGGCGGAAGTCCATGGAATGTAATTGAGATCTCGGACGACGAGGAGAAAGAAGAGCATGATGACGGGTTGGATGTATCTGCAGAACAGCAGA

Ace file of the UniGene sp_v3.0_unigene108553

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	84%
Sma3	TRAUCO	-	-	1.949e-06	-

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: Distance to subject end: 372 aas, your sequence is shorter than subject: 41 - 412

Fln protein: MDPHRPSYHNYGGSPWNVIEISDDEEKEEHDDGLDVSAEQQ

Protein Length: 42

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGAAAGGGAAAGGCAATAGAAATATAAACCCTGTTGGATTGCTACGTGATTGCATACTCAGCTCACGGCTCA_-_ATGGATCCTCATCGTCCATCCTATCACAACTATGGCGGAAGTCCATGGAATGTAATTGAGATCTCGGACGACGAGGAGAAAGAAGAGCATGATGACGGGTTGGATGTATCTGCAGAACAGCAGA

Fln Alignment:

AllPine_a_c41552___MDPHRPSYHNYGGSPWNVIEISDDEEKEEHDDGLDVSAE
B3V288________________MDPHRPSYHNYGGSPWNVIEISDYEE-EEYDEGLDDSAQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain