SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108466

Length: 411 nt

UniGene Fasta

>sp_v3.0_unigene108466
CAGTCTTGAAATTCAATCAAGCCATCCAATGTCATCTGCCATTACAGCATACTGTCGGCATCGAGGACTAATGACATCAGCAGAAGTGACAGAGTTCCAGGCGCTCCATGGTGAAGGAATCTGTGGTGTCATTGAAGACCATAAAATTCATATTGGGAATGCTCGTTTAGCAAGTCGGCTAGGTTGGATTCAAGATTCATCGAATACATGGAACAGCGAAGGACCAACGGTGGGGTATGTGGGCGTAGACGAGAAGCTCGCATTAGTGTTTAGTGTTGCAGATCAAATCAGACCAGAAGCAGCTGAAGCCCTGCGGGATTTGAAAAAATTAGGAATCCAATTGGCCATGCTTACCGGAGACAGCTCTACTGCCGCTGCAATTGTTGAAAAAGAGATAGGGGAGATTGCAGT

Ace file of the UniGene sp_v3.0_unigene108466

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative heavy-metal transporter [Arabidopsis thaliana] gb\|AAR10767.1\| potential Zn/Cd heavy metal transporter [Arabidopsis thaliana]	-	-	1.0e-20	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Gene names
Sma3	PHYPADRAFT_125099; PHYPADRAFT_146019;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cation channel activity	GO:0005261	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, cadmium-transporting	IPR001366	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating	IPR006404	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 136 - 998

Fln protein: SLEIQSSHPMSSAITAYCRHRGLMTSAEVTEFQALHGEGICGVIEDHKIHIGNARLASRLGWIQDSSNTWNSEGPTVGYVGVDEKLALVFSVADQIRPEAAEALRDLKKLGIQLAMLTGDSSTAAAIVEKEIGEIA

Protein Length: 137

Fln nts: CAGTCTTGAAATTCAATCAAGCCATCCAATGTCATCTGCCATTACAGCATACTGTCGGCATCGAGGACTAATGACATCAGCAGAAGTGACAGAGTTCCAGGCGCTCCATGGTGAAGGAATCTGTGGTGTCATTGAAGACCATAAAATTCATATTGGGAATGCTCGTTTAGCAAGTCGGCTAGGTTGGATTCAAGATTCATCGAATACATGGAACAGCGAAGGACCAACGGTGGGGTATGTGGGCGTAGACGAGAAGCTCGCATTAGTGTTTAGTGTTGCAGATCAAATCAGACCAGAAGCAGCTGAAGCCCTGCGGGATTTGAAAAAATTAGGAATCCAATTGGCCATGCTTACCGGAGACAGCTCTACTGCCGCTGCAATTGTTGAAAAAGAGATAGGGGAGATTGCAGT

Fln Alignment:

AllPine_a_c41421___SLEIQSSHPMSSAITAYCRH-------------RGLMTS-----AEVTEFQALHGEGICGVIEDHKIHIGNARLASRLGWI-----QDSSNTWNSEGPTVGYVGVDEKLALVFSVADQIRPEAAEALRDLKKLGIQLAMLTGDSSTAAAIVEKEIG
B8LQ20________________SAEASSEHPLARAVVDYAYHFHFFGEPPKDMDMQGLRTKNTAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDGVFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain