SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108347

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene108347
TGGAGGATGAGTCAGGTCAGCAACAATATCAGGGCCAACTTGAAGGTGCGCAGCATGCAACTTACTACCTATTGATGATGCATGGGAAAGAGTTTCTTGCTATTCCTGCTGGCTCATGGTATAACTTCAATAAAGTGGCTCAGTATAAGCAGCTTACTTTGGAGGAAGCTGAGGAGA

Ace file of the UniGene sp_v3.0_unigene108347

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mutant TFIIF-alpha [Arabidopsis thaliana]	-	-	6.0e-14	67%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	84%
Sma3	Transcription Factor IIF, Rap30/Rap74, interaction	-	-	5.379e-09	-

Source	Gene names
Sma3	At4g12610; GSVIVT00005358001; GSVIVT00008406001; LOC_Os03g14720; LOC_Os10g10990; MtrDRAFT_AC150798g17v2; MtrDRAFT_AC150798g21v2; Os03g0251800; Os10g0188100; OsI_10779; OsI_32946; OsJ_10163; OsJ_30924; PHYPADRAFT_50627; POPTRDRAFT_1080142; POPTRDRAFT_25482

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Transcription initiation factor IIF, alpha subunit	IPR008851	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G12610.2	-	5.0e-14	90%
RefSeq	Arabidopsis thaliana	NP_192998.3	transcription initiation factor IIF subunit alpha [Arabidopsis thaliana]	4.0e-14	90%
RefSeq	Populus trichocarpa	XP_002308775.1	predicted protein [Populus trichocarpa]	2.0e-17	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 58 - 543

Fln protein: EDESGQQQYQGQLEGAQHATYYLLMMHGKEFLAIPAGSWYNFNKVAQYKQLTLEEAEE

Protein Length: 59

Fln nts: TGGAGGATGAGTCAGGTCAGCAACAATATCAGGGCCAACTTGAAGGTGCGCAGCATGCAACTTACTACCTATTGATGATGCATGGGAAAGAGTTTCTTGCTATTCCTGCTGGCTCATGGTATAACTTCAATAAAGTGGCTCAGTATAAGCAGCTTACTTTGGAGGAAGCTGAGGAGA

Fln Alignment:

AllPine_a_c41243___EDESXXXXXXXXXXXXXHATYYLLMMHGKEFLAIPAGSWYNFNKVAQYKQLTLEEAEE
Q9SU25-2______________EDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
69	33	66			0.997452
83		33		66	0.997452
84	33		66		0.997452
89	66		33		0.997452
101		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain