SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108338

Length: 494 nt

UniGene Fasta

>sp_v3.0_unigene108338
CAATGGGAGTTCCAAGTTGGCCCTTGTGAGGGTATCTCTATGGGTGATCACCTCTGGATGTCTCGTTACCTTCTCGTCCGCATTGCTGAGCAGTGGGGTATCAAGGTCTCCTTCCACCCTAAGCCTCTTTCAGGGGACTGGAATGGTGCTGGTTGCCACACCAACTACAGCACCAAGGCCATGCGTGAGCCTGGAGGTATGAAACACATAGAGGAGGCGATCGAGAAGCTCTCAAAGAGACACGCTGAGCACATCGCCGTCTACGGCGAGGACAACGACCTCCGTCTCACTGGTCGTCATGAGACTGGCCACATTGGCAACTTCAGTTCCGGAGTTGCTAACCGTGGTGCTTCCATTCGGGTACCAAGGCACGTCGCTACCCAGGGCTATGGATACCTAGAAGATCGTCGCCCTGCATCCAACATTGACCCATACCGTGTGACTGGAATTATCGTGGAGACCACTGTTCTTGACAAGTAGAAAATTTCTTTGTT

Ace file of the UniGene sp_v3.0_unigene108338

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamine synthetase n=1 Tax=Suillus bovinus RepID=GLNA_SUIBO	-	-	95%
FL-Next	sp=Glutamine synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Glutamine synthetase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate--ammonia ligase.	EC:6.3.1.2	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	Nitrogen metabolism	00910	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT5G35630; At1g48470; At1g66200; At3g17820; At5g16570; At5g35630; At5g37600; CHLREDRAFT_129468; CHLREDRAFT_133971; CHLREDRAFT_136895; CsGS1; DtCGS-1; F15E12.14; GLN1; GLN1-1; GLN1-2; GLN1-3; GLN1-4; GLN1-5; GLN2; GLN3; GLN4; GLN5; GLN6; GLNA; GNL1; GNL2;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glutamate-ammonia ligase activity	GO:0004356	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	glutamine biosynthetic process	GO:0006542	Biological Process	-
Sma3	nitrogen compound metabolic process	GO:0006807	Biological Process	-
Sma3	nitrogen fixation	GO:0009399	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine synthetase, catalytic domain	IPR008146	-	-
Sma3	Glutamine synthetase, beta-Grasp	IPR008147	-	-
Sma3	Glutamine synthetase/guanido kinase, catalytic domain	IPR014746	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35630.1	GS2, GLN2, ATGSL1 glutamine synthetase 2 chr5:13831220-13833239 FORWARD LENGTH=430	64%
RefSeq	Arabidopsis thaliana	NP_198413.1	glutamine synthetase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306385.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR48

Fln msg: your sequence is shorter than subject: 160 - 355

Fln protein: QWEFQVGPCEGISMGDHLWMSRYLLVRIAEQWGIKVSFHPKPLSGDWNGAGCHTNYSTKAMREPGGMKHIEEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGNFSSGVANRGASIRVPRHVATQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK*

Protein Length: 161

Fln nts: CAATGGGAGTTCCAAGTTGGCCCTTGTGAGGGTATCTCTATGGGTGATCACCTCTGGATGTCTCGTTACCTTCTCGTCCGCATTGCTGAGCAGTGGGGTATCAAGGTCTCCTTCCACCCTAAGCCTCTTTCAGGGGACTGGAATGGTGCTGGTTGCCACACCAACTACAGCACCAAGGCCATGCGTGAGCCTGGAGGTATGAAACACATAGAGGAGGCGATCGAGAAGCTCTCAAAGAGACACGCTGAGCACATCGCCGTCTACGGCGAGGACAACGACCTCCGTCTCACTGGTCGTCATGAGACTGGCCACATTGGCAACTTCAGTTCCGGAGTTGCTAACCGTGGTGCTTCCATTCGGGTACCAAGGCACGTCGCTACCCAGGGCTATGGATACCTAGAAGATCGTCGCCCTGCATCCAACATTGACCCATACCGTGTGACTGGAATTATCGTGGAGACCACTGTTCTTGACAAGTAG___AAAATTTCTTTGTT

Fln Alignment:

AllPine_a_c41223___QWEFQVGPCEGISMGDHLWMSRYLLVRIAEQWGIKVSFHPKPLSGDWNGAGCHTNYSTKAMREPGGMKHIEEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGNFSSGVANRGASIRVPRHVATQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK
C0PR48________________QWEFQVGPTVGISSGDQVWAARYILERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYIVTSMITETTILLK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
210	75			25	0.996476
214			75	25	0.996481
220		33	66		0.997452
229	25		75		0.996486
316		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain