SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108330

Length: 254 nt

UniGene Fasta

>sp_v3.0_unigene108330
AGCATATGGCATTGGTGTCTATCTTGCACCTGAAAATTGTGCCTATATTAGTGCAGCGTACTCGGATGTTGACGAAATTGGAGAACAACACATGGTGTTGTGCCGTGTGATAATGGGGAATATAGAGCAGGTCAAGCATGGTTCACAACAGTTTCATCCCAGCAGTGAACAATTTCGATACCGGTGTAGATGATCTTGAAAATCCAAAGCGCTACATTGTTTGGAGTACCCACATGAACACGTATATATTGCCA

Ace file of the UniGene sp_v3.0_unigene108330

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Inactive poly [ADP-ribose] polymerase RCD1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%

Source	Gene names
Sma3	GSVIVT00015695001; GSVIVT00015697001; LOC_Os10g42710; OSJNBa0035H01.4; Os10g0577800; OsI_34783; OsJ_32586; PHYPADRAFT_144524; PHYPADRAFT_161129; PHYPADRAFT_5447; VITISV_006105; VITISV_023316;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	NAD+ ADP-ribosyltransferase activity	GO:0003950	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3		IPR015706	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32230.1	RCD1, CEO, CEO1, ATP8, AtRCD1 WWE protein-protein interaction domain protein family chr1:11613427-11615894 FORWARD LENGTH=589	1.0e-19	49%
RefSeq	Arabidopsis thaliana	NP_564391.1	WWE protein-protein interaction domain family protein [Arabidopsis thaliana]	1.0e-19	49%
RefSeq	Populus trichocarpa	XP_002301130.1	predicted protein [Populus trichocarpa]	3.0e-21	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RY59

Fln msg: Overlapping hits, possible frame ERROR between 175 and 153, Distance to subject end: 147 aas, your sequence is shorter than subject: 85 - 589

Fln protein: AYGIGVYLAPENCAYISAAYSDVDEIGEQHMVLCRVIMGNIEQVKHGSQQxxxxxxxxxDTGVDDLENPKRYIVWSTHMNTYILP

Protein Length: 86

Fln nts: AGCATATGGCATTGGTGTCTATCTTGCACCTGAAAATTGTGCCTATATTAGTGCAGCGTACTCGGATGTTGACGAAATTGGAGAACAACACATGGTGTTGTGCCGTGTGATAATGGGGAATATAGAGCAGGTCAAGCATGGTTCACAACAGxxxxxxxxxxxxxxxxxxxxxxxxxxxGATACCGGTGTAGATGATCTTGAAAATCCAAAGCGCTACATTGTTTGGAGTACCCACATGAACACGTATATATTGCCA

Fln Alignment:

AllPine_a_c41211___YGIGVYLAPENCAYISAAYSDVDEIGEQHMVLCRVIMGNIEQVKHGSQQxxxxxxxxDTGVDDLENPKRYIVWSTHMNTYILP
Q8RY59________________YGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQxxxxxxxxDNGVDDIESPKNYIVWNINMNTHIFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain