SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108276

Length: 432 nt

UniGene Fasta

>sp_v3.0_unigene108276
GTCTTTGGAGGCGGATCGCAAGCTTTCGAACGCATGCGATAATGGTCCAATTCTCTGCAGAATCGAAAGAGGAAAACGGAGATTCTAAGATCCATAGACAAAGTGGGAGCTCTTGTTGTTACTTGAGCGGAATTTATTTAAACAAGTCAGTTAGTCTGGGTATGAGGAACAGATCTCCTCTCATCAACGTATTTTAACATTCAACAAGCTGAGATGCGGTTTAAGATTGTATAAAGATGCAAGCGAAAGGCATTTCTTCAGAAGCTTTCAGAGTTAGTGTTTCAAGTGCCCCTAGTTCTTCAAGTCAAGGTTCTGGTCAAGATGATTATGATGCCCTGGGGGATGTTTATGTTTGGGGTGAGGGAACCTGGGATGGTGTTTTGGGAGGTGCTGTTGAAAAGACACCAATTTTCCAGTTGCAAACACAGATGC

Ace file of the UniGene sp_v3.0_unigene108276

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	71%
Sma3	Ran GTPase binding protein, putative	-	-	2.125e-13	-

Source	Gene names
Sma3	At1g76950; At5g12350; At5g19420; F22K20.5; GSVIVT00002262001; GSVIVT00022255001; GSVIVT00030935001; GSVIVT00036997001; OJ1206_C08.13; OJ1345_B12.1; OJ1354_D07.10; OSJNBb0035J08.16; Os01g0952300; Os01g0964800; Os05g0106700; Os05g0384800; Os05g0545200; OsI_

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GM09

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 804 aas, your sequence is shorter than subject: 143 - 1063

Fln protein: LWRRIASFRTHAIMVQFSAESKEENGDSKIHRQSGSSCCYLSGIYLNKSVSLGMRNRSPLINVF*HSTS*DAV*DCIKMQAKGISSEAFRVSVSSAPSSSSQGSGQDDYDALGDVYVWGEGTWDGVLGGAVEKTPIFQLQTQM

Protein Length: 144

Fln nts: GTCTTTGGAGGCGGATCGCAAGCTTTCGAACGCATGCGATAATGGTCCAATTCTCTGCAGAATCGAAAGAGGAAAACGGAGATTCTAAGATCCATAGACAAAGTGGGAGCTCTTGTTGTTACTTGAGCGGAATTTATTTAAACAAGTCAGTTAGTCTGGGTATGAGGAACAGATCTCCTCTCATCAACGTATTTTAACATTCAACAAGCTGAGATGCGGTTTAAGATTGTATAAAGATGCAAGCGAAAGGCATTTCTTCAGAAGCTTTCAGAGTTAGTGTTTCAAGTGCCCCTAGTTCTTCAAGTCAAGGTTCTGGTCAAGATGATTATGATGCCCTGGGGGATGTTTATGTTTGGGGTGAGGGAACCTGGGATGGTGTTTTGGGAGGTGCTGTTGAAAAGACACCAATTTTCCAGTTGCAAACACAGATGC

Fln Alignment:

AllPine_a_c41113___KGISSEAFRXXXXXXXXXXXXXXXXDDYDALGDVYVWGEGTWDGVLGGAVEKT
B9GM09________________KNTNTEAFRVSLSSAVSSSSQGSGRDDNDALGDVYIWGEGTGEGILGGGVHKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain