SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108189

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene108189
AATGATCCATTCAATCAAGAAACAGGAAGTCAAGACACATTTTTTGGACGAAACATGATGCCTTCTCCTCAGAAGGACGAGGTGCTAAGGCCAGATCCCATGGTGGTTGCTACCAAACTGCTTGCTCGGAGGAAAATGGTTGATACGGGCACACAATTCAACATGCTTGCTGCCTCCTGGATTCAGTTCATGATTCATGATTGGATTGATCATGTGGAAGACACCGAACAGACAGAGTTAAGAGCCCCGTTGAGCGTTGCATCACAATGTCCACTTAAAGCATTTAGATTTTTTGAAAGCAAAGAAGTTCCTACTGGTTT

Ace file of the UniGene sp_v3.0_unigene108189

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-DOX1 n=1 Tax=Solanum lycopersicum RepID=Q69F00_SOLLC	-	-	4.99997e-41	73%
FL-Next	tr=Pathogen-inducible alpha-dioxygenase; Nicotiana attenuata (Coyote tobacco).	-	-	0.0	72%
Sma3	Oxidoreductase, putative	-	-	4.38e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	NAD(P)H oxidase.	EC:1.6.3.1	-	5.061e-07	-

Source	Gene names
Sma3	At1g73680; At3g01420; At3g01420/T13O15.6; F25P22.10; GSVIVT00020782001; GSVIVT00020785001; LOC_Os12g26290; MtrDRAFT_AC139526g53v2; Os12g0448900; OsI_38200; OsJ_35967; PHYPADRAFT_191272; PIOX_NICAT; POPTRDRAFT_772644; POPTRDRAFT_820569; RCOM_0570940; RCOM_

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid alpha-oxidation	GO:0001561	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Haem peroxidase, animal	IPR002007	-	0.0	-
Sma3	Haem peroxidase, animal, subgroup	IPR019791	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01420.1	ALPHA-DOX1, DOX1, DIOX1, PADOX-1 Peroxidase superfamily protein chr3:159689-162726 REVERSE LENGTH=639	70%
RefSeq	Arabidopsis thaliana	NP_186791.1	alpha-dioxygenase [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002311389.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9AXU5

Fln msg: Distance to subject end: 435 aas, your sequence is shorter than subject: 106 - 643

Fln protein: NDPFNQETGSQDTFFGRNMMPSPQKDEVLRPDPMVVATKLLARRKMVDTGTQFNMLAASWIQFMIHDWIDHVEDTEQTELRAPLSVASQCPLKAFRFFESKEVPTG

Protein Length: 107

Fln nts: AATGATCCATTCAATCAAGAAACAGGAAGTCAAGACACATTTTTTGGACGAAACATGATGCCTTCTCCTCAGAAGGACGAGGTGCTAAGGCCAGATCCCATGGTGGTTGCTACCAAACTGCTTGCTCGGAGGAAAATGGTTGATACGGGCACACAATTCAACATGCTTGCTGCCTCCTGGATTCAGTTCATGATTCATGATTGGATTGATCATGTGGAAGACACCGAACAGACAGAGTTAAGAGCCCCGTTGAGCGTTGCATCACAATGTCCACTTAAAGCATTTAGATTTTTTGAAAGCAAAGAAGTTCCTACTGGTTT

Fln Alignment:

AllPine_a_c40958___NDPFNQETGSQDTFFGRNMMPSPQKDEVLRPDPMVVATKLLARRKMVDTGTQFNMLAASWIQFMIHDWIDHVEDTEQTELRAPLSVASQCPLKAFRFFESKEVPTG
Q9AXU5________________NDPFNEGAGSELSFFGRNMLPVDQHNQLKKPDPMVVATKLLARRNVVDTGKQFNMIAASWIQFMIHDWIDHLEDTKQIELRAPEEVASQCPLKSFKFFKTKEIPTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain