SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108158

Length: 299 nt

UniGene Fasta

>sp_v3.0_unigene108158
CACCAGATGGGCTCACTCCATACCCAAACTCGTCTGCCCAGGAGGGGACTTTGGCCTTATCATAAGCACTCGGGAGCTGAAGCGCATAGTTGGTGTGGACGAAGCGTCAATGACGATTACCGTAGAAAGTGGAGCGTCTCTGAGGGAGGTTATAGATGCTGCTGCCCAACATAATTTGGCTCTCCCTCACTCGCCCTATTGGGAGGGGATTACCATCGGAGGGCTGCTCAGCACCGGGGTACATGGCAGCTCTCTGTTCAATAATGGAAGTGCAGTTCATGAGTATGTTGTTGGCATGA

Ace file of the UniGene sp_v3.0_unigene108158

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0124600 protein n=2 Tax=Oryza sativa RepID=Q0E4D5_ORYSJ	-	-	6.0e-31	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	ECs	Term	Type	e value	Identity
Sma3	L-gulonolactone oxidase.	EC:1.1.3.8	-	5.767e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		5.767e-08	%
Sma3	Metabolic pathways	01100		5.767e-08	%

Source	Gene names
Sma3	At1g32300; At2g46740; At2g46750; At2g46760; At5g56490; F27G20_8; F5D14.6; GSVIVT00026155001; LOC_Os03g36530; OSIGBa0111E13.1; OSIGBa0113I06.5; OSJNBa0034E24.20; OSJNBa0034E24.8; Os01g0687800; Os02g0124600; Os03g0563100; Os04g0360500; Os04g0361500; Os08g01

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32300.1	D-arabinono-1,4-lactone oxidase family protein chr1:11651342-11653365 FORWARD LENGTH=595	8.0e-34	58%
RefSeq	Arabidopsis thaliana	NP_564393.1	D-arabinono-1,4-lactone oxidase-like protein [Arabidopsis thaliana]	1.0e-33	58%
RefSeq	Populus trichocarpa	XP_002302668.1	predicted protein [Populus trichocarpa]	2.0e-36	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9T9

Fln msg: Distance to subject end: 439 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 99 - 542

Fln protein: TRWAHSIPKLVCPGGDFGLIISTRELKRIVGVDEASMTITVESGASLREVIDAAAQHNLALPHSPYWEGITIGGLLSTGVHGSSLFNNGSAVHEYVVGM

Protein Length: 100

Fln nts: CACCAG_-_ATGGGCTCACTCCATACCCAAACTCGTCTGCCCAGGAGGGGACTTTGGCCTTATCATAAGCACTCGGGAGCTGAAGCGCATAGTTGGTGTGGACGAAGCGTCAATGACGATTACCGTAGAAAGTGGAGCGTCTCTGAGGGAGGTTATAGATGCTGCTGCCCAACATAATTTGGCTCTCCCTCACTCGCCCTATTGGGAGGGGATTACCATCGGAGGGCTGCTCAGCACCGGGGTACATGGCAGCTCTCTGTTCAATAATGGAAGTGCAGTTCATGAGTATGTTGTTGGCATGA

Fln Alignment:

AllPine_a_c40895___TRWAHSIPKLVCPGGDFGLIISTRELKRIVGVDEASMTITVESGASLREVIDAAAQHNLALPHSPYWEGITIGGLLSTGVHGSSLFNNGSAVHEYVVGM
D5A9T9________________TRYAHSIPKLVCPGGESGLIISTLHLDRVVSVDKRSMRMTLESGVTLKNLIDAAANEGLALPHSPYWLGLTVGGILGTGAHGSSLFGKGSAVHEFVVGM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
177	33			66	0.997471
181		66	33		0.997458
182			33	66	0.997459
234	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain