SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108120

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene108120
TGTCCGCAGGCTTGCATTTTATCTTCAGTTGAGCTGCATAATACTTGTCCAAAGACGGATCCGGGTAGCTCTCGAATTTTTGACACCCACTATTACATGAATTTGAAGGCGCGCAGAGGTCTCTTTCAATCTGATGCTGCGCTTCTGACCAACAACGAAGCCCAAGCATATGTTAATATAGAGTTGCAGGCCTCGACATTTTTCTCAGATTTTGGAATGTCTATG

Ace file of the UniGene sp_v3.0_unigene108120

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Pinus taeda RepID=O22602_PINTA	-	-	3.0e-14	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	POPTRDRAFT_568220;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G15180.1	Peroxidase superfamily protein chr5:4930561-4932211 FORWARD LENGTH=329	7.0e-14	52%
RefSeq	Arabidopsis thaliana	NP_197022.1	peroxidase 56 [Arabidopsis thaliana]	9.0e-14	52%
RefSeq	Populus trichocarpa	XP_002316610.1	predicted protein [Populus trichocarpa]	9.0e-16	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 75 - 324

Fln protein: CPQACILSSVELHNTCPKTDPGSSRIFDTHYYMNLKARRGLFQSDAALLTNNEAQAYVNIELQASTFFSDFGMSM

Protein Length: 76

Fln nts: TGTCCGCAGGCTTGCATTTTATCTTCAGTTGAGCTGCATAATACTTGTCCAAAGACGGATCCGGGTAGCTCTCGAATTTTTGACACCCACTATTACATGAATTTGAAGGCGCGCAGAGGTCTCTTTCAATCTGATGCTGCGCTTCTGACCAACAACGAAGCCCAAGCATATGTTAATATAGAGTTGCAGGCCTCGACATTTTTCTCAGATTTTGGAATGTCTATG

Fln Alignment:

AllPine_a_c40834___HNTCPKTDPGSSRIFDTHYYMNLKARRGLFQSDAALLTNNEAQAYVNIELQASTFFSDFGMSM
A9P1P4________________NKTIVEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQSYINKGLESSSFLWDFARSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain