SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108037

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene108037
GAAAGAGTAATTTGCCAGGAAGAAGTTAGCAATTCATCCTGGATCCGACCAATTAAGCTTCCTTTTGTGCAAGTGATCCCGCCATATACAACATGGATCTTTCTTGACAGGAACCAAAGGATGACAGATGACCAGTCAGTGGTGGGAAGGAGGCGTATTTACTATGGTCATTGTGGGAGTGAAGCATTGATTTGTAGTGACAGTGAGGAGGAGGTAGCTGAAGAAGAAGATGAGAAACATGAATTTACAGAAGGGGATGATTGTGTTCTACGGATGACAATACAAGAACACGGGCAATGTCAGGCTG

Ace file of the UniGene sp_v3.0_unigene108037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2	-	-	0.0	66%
Sma3	SET domain protein	-	-	2.68e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	1.57e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		1.57e-16	%

Source	Gene names
Sma3	At2g23380; At4g02020; CLF; EZ1; EZ2; EZ3; EZA1; F26B6.3; GSVIVT00019523001; GSVIVT00028115001; ICU1; LOC_Os03g19480; MEZ1; MEZ2; MEZ3; Os03g0307800; Os06g0275500; OsI_22514; OsJ_10569; OsJ_20958; P0038C05.29; P0676F10.40; PHYPADRAFT_187038; PIF1; PIF2; PO

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23380.1	CLF, ICU1, SDG1, SET1 SET domain-containing protein chr2:9955570-9960117 FORWARD LENGTH=902	6.0e-26	63%
RefSeq	Arabidopsis thaliana	NP_179919.1	histone-lysine N-methyltransferase CLF [Arabidopsis thaliana]	8.0e-26	63%
RefSeq	Populus trichocarpa	XP_002307273.1	SET domain protein [Populus trichocarpa]	8.0e-28	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S4P5-2

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 102 - 341

Fln protein: ERVICQEEVSNSSWIRPIKLPFVQVIPPYTTWIFLDRNQRMTDDQSVVGRRRIYYGHCGSEALICSDSEEEVAEEEDEKHEFTEGDDCVLRMTIQEHGQCQA

Protein Length: 103

Fln nts: GAAAGAGTAATTTGCCAGGAAGAAGTTAGCAATTCATCCTGGATCCGACCAATTAAGCTTCCTTTTGTGCAAGTGATCCCGCCATATACAACATGGATCTTTCTTGACAGGAACCAAAGGATGACAGATGACCAGTCAGTGGTGGGAAGGAGGCGTATTTACTATGGTCATTGTGGGAGTGAAGCATTGATTTGTAGTGACAGTGAGGAGGAGGTAGCTGAAGAAGAAGATGAGAAACATGAATTTACAGAAGGGGATGATTGTGTTCTACGGATGACAATACAAGAACACGGGCAATGTCAGGCTG

Fln Alignment:

AllPine_a_c40699___IRPIKLPFVQVIPPYTTWIFLDRNQRMTDDQSVVGRRRIYYGHCGSEALICSDSXXXXXXXXXXXXXFTEGDDCVLRMTIQEHG
Q8S4P5-2______________VRFVKLPLVEKIPPYTTWIFLDKNQRMADDQSVVGRRRIYYDTVGNEALICSDSDEEIPEPEEEKHFFTKGEDHLIWRATQDHG

SNPs (tot: 3)

Position	A %	G %	T %	Probability
118	66		33	0.997461
215	66	33		0.997454
238	66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain