SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108003

Length: 357 nt

UniGene Fasta

>sp_v3.0_unigene108003
CAGGCTACCTTGATCCAGTGTATTATCAGTGCTATCAGCTGACAGAGAAATCCGATGTTTACAGCTTTGGGGTCGTTTTGGTGGAGATCATCTCTGCCAGATTAGCAGTGGACACAAATCGGAAAACCAGGGAAATCAACCTGGCTGCCATGGCAATAGCTAAGATTCAAGAAGGGGCTTTGCATGAGCTTGTGGATCCGCAGCTGAAAATCGAAAAGAATCATGAGGTGAAGGCCATGGTATGTGCAGTTGCCGAATTAGCGTTCAGATGCCTGGCGTCAGAAAGAGATGACAGACCACACATGAAGCAAGTTGTTGCTGAGCTTGGAGGAAATCAGACATTTGTATGGTGGTAGT

Ace file of the UniGene sp_v3.0_unigene108003

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9RSP6_RICCO	-	-	7.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Wall-associated kinase, putative	-	-	1.578e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	4.908e-07	-

Source	Gene names
Sma3	At1g18390; At1g25390; At1g66880; At2g23450; At5g38210; At5g66790; B21F5.1; F15H18.11; F15H18.25; F26B6.10; F2J7.14; F4N21.1; GSVIVT00005293001; GSVIVT00010057001; GSVIVT00011185001; GSVIVT00013473001; GSVIVT00014711001; GSVIVT00017721001; GSVIVT0002896400

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66880.1	Protein kinase superfamily protein chr1:24946928-24955438 FORWARD LENGTH=1296	1.0e-36	61%
RefSeq	Arabidopsis thaliana	NP_176860.2	protein kinase domain-containing protein [Arabidopsis thaliana]	1.0e-36	61%
RefSeq	Populus trichocarpa	XP_002337962.1	predicted protein, partial [Populus trichocarpa]	1.0e-39	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAR4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 118 - 166

Fln protein: GYLDPVYYQCYQLTEKSDVYSFGVVLVEIISARLAVDTNRKTREINLAAMAIAKIQEGALHELVDPQLKIEKNHEVKAMVCAVAELAFRCLASERDDRPHMKQVVAELGGNQTFVWW*

Protein Length: 119

Fln nts: CAGGCTACCTTGATCCAGTGTATTATCAGTGCTATCAGCTGACAGAGAAATCCGATGTTTACAGCTTTGGGGTCGTTTTGGTGGAGATCATCTCTGCCAGATTAGCAGTGGACACAAATCGGAAAACCAGGGAAATCAACCTGGCTGCCATGGCAATAGCTAAGATTCAAGAAGGGGCTTTGCATGAGCTTGTGGATCCGCAGCTGAAAATCGAAAAGAATCATGAGGTGAAGGCCATGGTATGTGCAGTTGCCGAATTAGCGTTCAGATGCCTGGCGTCAGAAAGAGATGACAGACCACACATGAAGCAAGTTGTTGCTGAGCTTGGAGGAAATCAGACATTTGTATGGTGGTAGT

Fln Alignment:

AllPine_a_c40647___GYLDPVYYQCYQLTEKSDVYSFGVVLVEIISARLAVDTNRKTREINLAAMAIAKIQE-GALHELVDPQLKIEKNHEVKAMVCAVAELAFRCLASERDDRPHMKQVVAELGGNQTF
D5AAR4________________GYAAPEYVATGHLTTRSDVYSFGVVLLELLSGRRTVDKNRPPGEQNLVEWAKPSLNDKRKVYHIMD--TRMEGQYSVKGAYCA-SKLALECLNPESKFRPHMKEVVERLEQLQNY

SNPs (tot: 3)

Position	A %	C %	G %	Probability
120	33	66		0.997453
125	66		33	0.997464
163	66		33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain