SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107999

Length: 345 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene107999
ATGACAAATTTTGGGGACTTGGATGGTGGTTTGAAGCATTCAAGGGATGATGGTTTATTCGAAAGCCCAAGCCCGGTATAGCAGACGGTGTGCTTGGGATTTCACAGGCACCGCCGCCCAGAAATCGATTGGTGAATTCAAGATTGCCTACTTTAGAAGAGAACTTTTCTTTCAAAAAAGCTTCTGCAATTGCTTTCAGCACAGATACAGATGCTGAAGGGGACAGAAGCTCAGTTTAATAAAGCTTGCCAGCCTTATTGAGATAACTGCCAAGGGAGGTGCTGAGAAGTTGGATCTTCAAGGAAAATTGATGGACCAAGTTGAGTGGCTGCCCGACTCAATTGG

Ace file of the UniGene sp_v3.0_unigene107999 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat-containing protein, putative (EC:3.1.3.16)	-	-	6.0e-09	73%
FL-Next	tr=Leucine-rich repeat-containing protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	75%

Source	Gene names
Sma3	At2g17440; GSVIVT00019317001; Os08g0511700; OsI_29848; OsJ_27903; P0711H09.3; PIRL5; POPTRDRAFT_208145; POPTRDRAFT_218427; RCOM_0280590; psr9;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17440.1	PIRL5 plant intracellular ras group-related LRR 5 chr2:7571331-7573406 FORWARD LENGTH=526	1.0e-11	68%
RefSeq	Arabidopsis thaliana	NP_179336.1	ras group-related LRR 5 protein [Arabidopsis thaliana]	1.0e-11	68%
RefSeq	Populus trichocarpa	XP_002310108.1	predicted protein, partial [Populus trichocarpa]	5.0e-13	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7K2L1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 311 aas, your sequence is shorter than subject: 114 - 585

Fln protein: *QILGTWMVV*SIQGMMVYSKAQARYSRRCAWDFTGTAAQKSIGEFKIAYFRRELFFQKSFCNCFQHRYRC*RGQKLSLIKLASLIEITAKGGAEKLDLQGKLMDQVEWLPDSI

Protein Length: 115

Fln nts: ATGACAAATTTTGGGGACTTGGATGGTGGTTTGAAGCATTCAAGGGATGATGGTTTATTCGAAAGCCCAAGCCCGGTATAGCAGACGGTGTGCTTGGGATTTCACAGGCACCGCCGCCCAGAAATCGATTGGTGAATTCAAGATTGCCTACTTTAGAAGAGAACTTTTCTTTCAAAAAAGCTTCTGCAATTGCTTTCAGCACAGATACAGATGCTGAAGGGGACAGAAGCTCAGTTTAATAAAGCTTGCCAGCCTTATTGAGATAACTGCCAAGGGAGGTGCTGAGAAGTTGGATCTTCAAGGAAAATTGATGGACCAAGTTGAGTGGCTGCCCGACTCAATTGG

Fln Alignment:

AllPine_a_c40641___GQKLSLIKLASLIEITAKGGAEKLDLQGKLMDQVEWLPDSI
G7K2L1________________GDKLSLIKLASIIEVSAKKGTRDLKLQGKLMDQVDWLPDSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain