SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107935

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene107935
GTCACTTTTTCTAAACGCAGGGGTGGTCTGCTCAAGAAAGCCCACGAGTTATCGGTCCTCTGTGATGCAGAACTTGGGCTCATTATTTTTTCAAGCACCGGCAAGCTCTTCGAGTATTCCAGCGCTTCTTCCAGCATGAGAAAGATCATAGAGAGATACCAAAAGGTTTCTGGAGCCCGACTGTCCGAGATTGACAACCAGCATTTATACTGTGAGATAACGAGAATGAAGAATGAAAATGAAAAGCTTCAGACTAATATCAGGCATATGCTGGGGGAGATCTAACTTCCATGACTACGGCGGAGTTACATCACCTGGAACAACAATTGGAAGTCGCAGCAAATCGT

Ace file of the UniGene sp_v3.0_unigene107935

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-box transcription factor GbMADS10 n=1 Tax=Ginkgo biloba RepID=Q58A73_GINBI	-	-	1.00053e-42	93%
FL-Next	tr=B-class MADS-box transcription factor; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	67%
Sma3	MADS-box transcription factor	-	-	1.485e-20	-

Source	Gene names
Sma3	AGL10; AGL26; AGL35; AGL7; AP1; AP1-a; AP1-c; AP1a; AP3-1; AP3-2; AP3-3; AlsGLO; ApMADS3; At1g26310; At1g69120; B1065E10.30; BoB028L01.100; BoB048N13.040; BoCAL; BobCAL; Boi1AP1; Boi2AP1; BoiCAL; CAL; CcPI; DAL13; EfAP3; EfPI; F28B23.24; F4N2.9; FBP23; FB

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Adipokinetic hormone, conserved site	IPR002047	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20240.1	PI K-box region and MADS-box transcription factor family protein chr5:6829203-6831208 FORWARD LENGTH=208	5.0e-26	49%
RefSeq	Arabidopsis thaliana	NP_197524.1	Floral homeotic protein PISTILLATA [Arabidopsis thaliana]	6.0e-26	49%
RefSeq	Populus trichocarpa	XP_002310645.1	predicted protein, partial [Populus trichocarpa]	3.0e-31	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B2ZX83

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 96 aas, your sequence is shorter than subject: 95 - 229

Fln protein: VTFSKRRGGLLKKAHELSVLCDAELGLIIFSSTGKLFEYSSASSSMRKIIERYQKVSGARLSEIDNQHLYCEITRMKNENEKLQTNIRHMLGEI*

Protein Length: 96

Fln nts: GTCACTTTTTCTAAACGCAGGGGTGGTCTGCTCAAGAAAGCCCACGAGTTATCGGTCCTCTGTGATGCAGAACTTGGGCTCATTATTTTTTCAAGCACCGGCAAGCTCTTCGAGTATTCCAGCGCTTCTTCCAGCATGAGAAAGATCATAGAGAGATACCAAAAGGTTTCTGGAGCCCGACTGTCCGAGATTGACAACCAGCATTTATACTGTGAGATAACGAGAATGAAGAATGAAAATGAAAAGCTTCAGACTAATATCAGGCATATGCTGGGGGAGATCTAACTTCCATGACTACGGCGGAGTTACATCACCTGGAACAACAATTGGAAGTCGCAGCAAATCGT

Fln Alignment:

AllPine_a_c40535___VTFSKRRGGLLKKAHELSVLCDAELGLIIFSSTGKLFEYSSASSSMRKIIERYQKVSGARLSEIDNQHL-YCEITRMKNENEKLQTNIRHMLGE
B2ZX83________________VTFSKRKGGLRKKAHELSVLCDAEVALIIFSSTGKLIEY--ASSSMKKILERYVTVSGARVWDYEQQQMFYYEVERSKNENEWLRSQLRHRMGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain