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UniGene Name: sp_v3.0_unigene107919
Length: 225 nt
 UniGene Fasta
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Ace file of the UniGene sp_v3.0_unigene107919
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Putative elongation factor 1A (Fragment) n=1 Tax=Cupressus sempervirens RepID=B1PID4_9CONI | - | - | 4.0e-27 | 98% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 98% |
| Sma3 | Elongation factor 1-alpha | - | - | 0.0 | - |
| Source | Gene names |
|---|---|
| Sma3 | A1; A2; A3; A4; AT1G07930; AT1G07940; AT5G60390; AcoEF1a; At1g07920; At1g07920/T6D22.2; At1g07930; At1g07940; At1g35550; At5g60390; BLT63; EF-1; EF-1-alpha; EF-1-alpha1; EF-1alpha; EF1; EF1-A; EF1-a; EF1-a1; EF1-alpha; EF1A; EF1A1; EF1A2; EF1A3; EF1A4; EF |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
| Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | translation elongation factor activity | GO:0003746 | Molecular Function | 0.0 | - |
| Sma3 | GTPase activity | GO:0003924 | Molecular Function | 0.0 | - |
| Sma3 | GTP binding | GO:0005525 | Molecular Function | 0.0 | - |
| Sma3 | translational elongation | GO:0006414 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Protein synthesis factor, GTP-binding | IPR000795 | - | 0.0 | - |
| Sma3 | Translation elongation factor EFTu/EF1A, C-terminal | IPR004160 | - | 0.0 | - |
| Sma3 | Translation elongation factor EFTu/EF1A, domain 2 | IPR004161 | - | 0.0 | - |
| Sma3 | Translation elongation factor EF1A, eukaryotic/archaeal | IPR004539 | - | 0.0 | - |
| Sma3 | Carbohydrate kinase, FGGY, conserved site | IPR018483 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G60390.1 | GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449 | 2.0e-31 | 93% |
| RefSeq | Arabidopsis thaliana | NP_001077483.1 | Elongation factor 1-alpha [Arabidopsis thaliana] | 2.0e-31 | 93% |
| RefSeq | Populus trichocarpa | XP_002315286.1 | predicted protein, partial [Populus trichocarpa] | 1.0e-33 | 93% |
| Full-Lengther Next Prediction |
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Fln status: Putative C-terminus
Fln database: coniferopsida.fasta
Fln subject: A9P004
Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 61 - 113
Fln protein:
R
Protein Length:
62
Fln nts:
G
Fln Alignment:
AllPine_a_c40506___RSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKS
A9P004________________RSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKA
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
