SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107908

Length: 588 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene107908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR	-	-	4.00001e-40	62%
FL-Next	sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Dicer-like protein	-	-	3.417e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribonuclease III.	EC:3.1.26.3	-	7.207e-10	-

Source	Gene names
Sma3	At1g01040; At3g03300; CAF; DCL1504; DCL1507; DCL1a; DCL1b; DCL4; DCL901; DCL902; DCL903; DCL904; DCL905; GSVIVT00005618001; GSVIVT00025032001; GSVIVT00026189001; LOC_Os03g38740; MtrDRAFT_AC150443g32v2; OSIGBa0157K09-H0214G12.2; OSJNBa0057D11.8-1; OSJNBb00

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nuclear dicing body	GO:0010445	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ribonuclease III activity	GO:0004525	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	virus induced gene silencing	GO:0009616	Biological Process	-
Sma3	embryonic pattern specification	GO:0009880	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	-
Sma3	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	-
Sma3	primary miRNA processing	GO:0031053	Biological Process	-
Sma3	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Ribonuclease III domain	IPR000999	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Dicer double-stranded RNA-binding fold	IPR005034	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03300.1	DCL2, ATDCL2 dicer-like 2 chr3:768020-774833 REVERSE LENGTH=1388	9.80909e-45	59%
RefSeq	Arabidopsis thaliana	NP_001189798.1	protein dicer-like 2 [Arabidopsis thaliana]	1.96182e-44	59%
RefSeq	Populus trichocarpa	XP_002312197.1	dicer-like protein [Populus trichocarpa]	0.0	62%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
169		33		66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain