SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107832

Length: 952 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene107832

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Putative pentatricopeptide (PPR) repeat-containing protein	-	-	2.609e-11	-

Source	Gene names
Sma3	At1g08070; At1g11290; At1g20230; At2g01510; At2g22070; At2g27610; At3g12770; At3g13770; At3g23330; At3g26782; At3g46790; At3g49140; At3g57430; At4g02750; At4g16835; At4g18750; At4g30700; At4g33990; At4g37380; B1032F05.19; B1080A02.28; CRR2; DYW10; DYW9; E

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	56%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002300144.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Separated hits, possible frame ERROR between 271 and 274, atg_distance in limit (1-15): atg_distance = 9,

Fln protein: MIVGYGLHGYSEDALLLFTQMRETDKRPNEITFIGVLAACSHAGRLDEGRQYFDCMTRDYCITPSTKHYACMVDLHGRAGQLEDAYxxIKRMPLEPDAGVWGALLGACRIHCNIELAEHVAEHLFALEPENAGYYVLLSNIYAAAGRWDNVIKIRVLMRGRRVKKPPGYSFIEMNGHIHAFIVGDRSHPQSEEIYAMLESLAEQMKDAGYVANKSCVLQEVADEVKEHILCSHSEKLAIAFGLINTGPGIPLHVTKNLRVCGDCHTSTKFISKIAMREIIVRDANRFHHFKDGLCSCRDYW*

Protein Length: 303

Fln nts: ATGGAGTGCA_-_ATGATTGTGGGGTATGGATTGCATGGGTATAGTGAAGATGCCCTTCTGCTTTTTACACAAATGCGAGAGACAGATAAGAGACCAAATGAGATCACTTTCATTGGTGTTTTGGCTGCTTGTAGCCATGCAGGTCGGTTGGATGAGGGCCGTCAGTACTTTGATTGCATGACCAGAGATTATTGCATCACACCAAGTACGAAGCATTATGCATGCATGGTTGACCTTCATGGCCGAGCTGGCCAATTGGAAGATGCATATGAxxxTATAAAAAGAATGCCGTTAGAGCCTGACGCAGGTGTTTGGGGAGCCTTGCTTGGTGCCTGCAGAATCCACTGCAACATCGAGCTAGCTGAACACGTTGCAGAACACCTTTTTGCATTAGAACCTGAAAATGCAGGATATTATGTCTTACTGTCAAACATCTATGCAGCTGCTGGTAGGTGGGATAATGTAATAAAGATCAGAGTACTGATGAGAGGAAGGCGTGTGAAGAAGCCACCCGGATATAGCTTCATTGAGATGAATGGTCATATTCATGCCTTCATTGTGGGAGACAGATCACATCCTCAATCTGAGGAAATTTATGCAATGTTGGAGTCATTGGCTGAGCAGATGAAGGATGCGGGATATGTGGCTAACAAAAGTTGTGTGTTGCAGGAAGTGGCGGATGAGGTGAAAGAGCACATCCTTTGCAGTCACAGTGAGAAGCTGGCGATTGCTTTTGGGCTTATCAATACGGGCCCTGGAATCCCTCTCCATGTTACAAAGAATCTTCGTGTATGTGGTGACTGCCACACGTCTACTAAATTCATATCTAAGATTGCGATGAGAGAAATTATTGTAAGGGATGCGAACCGTTTTCATCATTTTAAGGATGGATTGTGCTCCTGCAGAGATTACTGGTGA___TGCTAAGTTAAAACCACTGTATCCATCTTCAGACATT

Fln Alignment:

AllPine_a_c40342___WSAMIVGYGLHGYSEDALLLFTQMRETDKRPNEITFIGVLAACSHAGRLDEGRQYFDCMTRDYCITPSTKHYACMVDLHGRAGQLEDAYExIKRMPLEPDAGVWGALLGACRIHCNIELAEHVAEHLFALEPENAGYYVLLSNIYAAAGRWDNVIKIRVLMRGRRVKKPPGYSFIEMNGHIHAFIVGDRSHPQSEEIYAMLESLAEQMKDAGYVANKSCVLQEVADEVKEHILCSHSEKLAIAFGLINTGPGIPLHVTKNLRVCGDCHTSTKFISKIAMREIIVRDANRFHHFKDGLCSCRDYW
D5ADG9________________WNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDxIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENMLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain