SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107817

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene107817
GGATACCTGGATCCAGAGTATTACAACACTCAAATGTTGTCAGAGAAGAGTGATGTGTATAGTTTTGGAGTGGTTTTGTTGGAGATCCTATGCGGTAGAAAACCTATAGATCTGACCGTAGCTGAAGAAGATGTAAACATCATAAGATGGGTGACACCGTATCTC

Ace file of the UniGene sp_v3.0_unigene107817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like kinase SYMRK [Lotus japonicus]	-	-	2.0e-13	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Kinase, putative	-	-	4.428e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.617e-07	-

Source	Gene names
Sma3	At2g39360; At3g46290; At5g38990; At5g39000; At5g59700; CR4; Cr4; F12M12.260; F18L15.10; GSVIVT00019576001; GSVIVT00024420001; GSVIVT00033858001; GSVIVT00037712001; GSVIVT00038043001; GSVIVT00038045001; GSVIVT00038046001; LOC_Os03g17300; LOC_Os03g43670; Mp

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48740.1	Leucine-rich repeat protein kinase family protein chr5:19765324-19769314 REVERSE LENGTH=895	3.0e-17	58%
RefSeq	Arabidopsis thaliana	NP_199685.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	4.0e-17	58%
RefSeq	Populus trichocarpa	XP_002301786.1	predicted protein [Populus trichocarpa]	5.0e-20	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACW2

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 55 - 360

Fln protein: GYLDPEYYNTQMLSEKSDVYSFGVVLLEILCGRKPIDLTVAEEDVNIIRWVTPYL

Protein Length: 56

Fln nts: GGATACCTGGATCCAGAGTATTACAACACTCAAATGTTGTCAGAGAAGAGTGATGTGTATAGTTTTGGAGTGGTTTTGTTGGAGATCCTATGCGGTAGAAAACCTATAGATCTGACCGTAGCTGAAGAAGATGTAAACATCATAAGATGGGTGACACCGTATCTC

Fln Alignment:

AllPine_a_c40310___GYLDPEYYNTQMLSEKSDVYSFGVVLLEILCGRKPIDLTVAEEDVNIIRWVTPYL
D5ACW2________________GYHAPEYAMTGQLSQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain