SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107554

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene107554
AATGCAAAAACATGGGATATGATGGTGTTGTGCTTGAGGCCTGGTCACAATGGGTAGCTTATGGCATTCTAAAAGATCCCAAATTACGTCAAATGGCATTGCAATTTGTTCAAGAACTTGGATCCAAGCTACATGCTACAAAAGCAGTTGAGGGGCTTGATCGTAACTTGCAGTTGGTGTTTGTCATT

Ace file of the UniGene sp_v3.0_unigene107554

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 18 protein [Arabidopsis thaliana] emb\|CAB80913.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE81972.1\| glycosyl hydrolase family 18 protein [Arabidopsis thaliana]	-	-	2.0e-13	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G01040.1	Glycosyl hydrolase superfamily protein chr4:453383-455407 FORWARD LENGTH=430	2.0e-18	50%
RefSeq	Arabidopsis thaliana	NP_192013.1	glycosyl hydrolase family 18 protein [Arabidopsis thaliana]	3.0e-18	50%
RefSeq	Populus trichocarpa	XP_002320856.1	predicted protein, partial [Populus trichocarpa]	3.0e-18	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUQ4

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 62 - 454

Fln protein: CKNMGYDGVVLEAWSQWVAYGILKDPKLRQMALQFVQELGSKLHATKAVEGLDRNLQLVFVI

Protein Length: 63

Fln nts: AATGCAAAAACATGGGATATGATGGTGTTGTGCTTGAGGCCTGGTCACAATGGGTAGCTTATGGCATTCTAAAAGATCCCAAATTACGTCAAATGGCATTGCAATTTGTTCAAGAACTTGGATCCAAGCTACATGCTACAAAAGCAGTTGAGGGGCTTGATCGTAACTTGCAGTTGGTGTTTGTCATT

Fln Alignment:

AllPine_a_c39870___CKNMGYDGVVLEAWSQWVAYGILKDPKLRQMALQFVQELGSKLHATKAVEGLDRNLQLVFVI
A9NUQ4________________CKNMGFDGVVLEAWSQWAAYGILKDPNLRQMALQFVQELGSMLHTAKTVDGLDRNLQLVFVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain