SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107142

Length: 530 nt

UniGene Fasta

>sp_v3.0_unigene107142
AATGTCAAGGGAGAGAGCTGCAGAAAGAGAACGCATGGTTCTTGACATAAAGGTCAAGTTACAGGGACTTTGGATGCGCCTGCTTAAGCTGGGTGCAACTGACGATCCGCTTTCTTCATTCGAGTATGGGACAATTCTTGCTCTAATTGAGTCAGATGCAGAAGGTATTGGCGGAAGTGGATTTGTTGAATGCATCAGGGAGCATATTCACTCGGGATGGCATTGCCAATTGACAGAGGAGCAGTTCATTGCAGTGAAGGAGTTGCTTAAGACAGCAATAAGCCGTGCCGTTGCCAGAGACGACATGGTTACTGTCAGAGATGCCTTGGAAACTTCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGTTCAACGCCATTTGAGTACTCTTCATGCCTGGTGGGAACTGCGATTTTGGGAAGGATATTTTGAGAGCATCATGGAGAAAGCCTCAAATGGCGTTGAACGTAATCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGT

Ace file of the UniGene sp_v3.0_unigene107142

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box and wd40 domain protein, putative (EC:2.7.11.7)	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	83%

Source	Gene names
Sma3	At1g49040; GSVIVT00017648001; Os01g0575500; OsI_02530; OsJ_02315; PHYPADRAFT_65344; POPTRDRAFT_823307; POPTRDRAFT_835082; RCOM_1617450;

Source	GOs	Term	Type	e value	Identity
Sma3	multidimensional cell growth	GO:0009825	Biological Process	0.0	-
Sma3	guard mother cell cytokinesis	GO:0010235	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	DENN	IPR001194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	dDENN	IPR005112	-	-
Sma3	uDENN	IPR005113	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G49040.1	SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) chr1:18139419-18148826 REVERSE LENGTH=1187	75%
RefSeq	Arabidopsis thaliana	NP_175333.3	stomatal cytokinesis defective / SCD1 protein (SCD1) [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002322040.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GTJ4

Fln msg: Distance to subject end: 498 aas, your sequence is shorter than subject: 176 - 1215

Fln protein: MSRERAAERERMVLDIKVKLQGLWMRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAISRAVARDDMVTVRDALETSAEIYKRDGNNVPDYVQRHLSTLHAWWELRFWEGYFESIMEKASNGVERNLLKYIREMVIMYQIT

Protein Length: 177

Fln nts: AATGTCAAGGGAGAGAGCTGCAGAAAGAGAACGCATGGTTCTTGACATAAAGGTCAAGTTACAGGGACTTTGGATGCGCCTGCTTAAGCTGGGTGCAACTGACGATCCGCTTTCTTCATTCGAGTATGGGACAATTCTTGCTCTAATTGAGTCAGATGCAGAAGGTATTGGCGGAAGTGGATTTGTTGAATGCATCAGGGAGCATATTCACTCGGGATGGCATTGCCAATTGACAGAGGAGCAGTTCATTGCAGTGAAGGAGTTGCTTAAGACAGCAATAAGCCGTGCCGTTGCCAGAGACGACATGGTTACTGTCAGAGATGCCTTGGAAACTTCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGTTCAACGCCATTTGAGTACTCTTCATGCCTGGTGGGAACTGCGATTTTGGGAAGGATATTTTGAGAGCATCATGGAGAAAGCCTCAAATGGCGTTGAACGTAATCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGT

Fln Alignment:

AllPine_a_c39253___MVLDIKVKLQGLWMRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAISRAVARDDMVTVRDALETSAEIYKRDGNNVPDYVQRHLSTLHAWWELRFWEGYFESIMEKASN
F6GTJ4________________MVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCHLTEEQFIAVKELLKTAIGRATSRNDMPTIRDALEVSAEMYKKDANNVPDYVQRHLISLSIWEELRFWEGYFDYLMDRSSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain