SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107134

Length: 356 nt

UniGene Fasta

>sp_v3.0_unigene107134
AATGTGCTTTGTCATGAACTACGACTTCCATTTGCCTGTTGGATTGCTGCTAATCAGAAAACCTCCTTTAGACGATATGAGATATCTCGGGTTTATAGAAAAGGAGTTGGCCATTCAGCTCCAAATCCTTGCCTTCAGGGGGATTTTGATATCGTTGGAGGAGAACCAACATTGACAGAAGGCGAAGTTATAAAGGTGGCAATGGATATTGTCAGGAAGTTCTTTGACTGGGATGCCTGTGAAATCCATGTCAACCATGCCCACATTTTGGATGCGATATGGTCATGGACTGGAGTTAAACAGGAATCTAAGCACGATGTGGCTAAGTTATTATCCTTGATATGTTCCTCATCTCC

Ace file of the UniGene sp_v3.0_unigene107134

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eif2alpha kinase, putative n=1 Tax=Ricinus communis RepID=B9T5C5_RICCO	-	-	2.0e-38	64%
FL-Next	sp=Probable serine/threonine-protein kinase GCN2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%

Source	Gene names
Sma3	At3g59410; F25L23_270; GCN2; GSVIVT00001939001; H0425E08.5; OJ990528_30.5; Os04g0492600; OsI_16439; OsJ_15299; RCOM_0656100;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cellular amino acid biosynthetic process	GO:0008652	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59410.2	-	1.96182e-44	61%
RefSeq	Arabidopsis thaliana	NP_191500.2	non-specific serine/threonine protein kinase [Arabidopsis thaliana]	2.94273e-44	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LX30

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 118 - 1241

Fln protein: NVLCHELRLPFACWIAANQKTSFRRYEISRVYRKGVGHSAPNPCLQGDFDIVGGEPTLTEGEVIKVAMDIVRKFFDWDACEIHVNHAHILDAIWSWTGVKQESKHDVAKLLSLICSSS

Protein Length: 119

Fln nts: AATGTGCTTTGTCATGAACTACGACTTCCATTTGCCTGTTGGATTGCTGCTAATCAGAAAACCTCCTTTAGACGATATGAGATATCTCGGGTTTATAGAAAAGGAGTTGGCCATTCAGCTCCAAATCCTTGCCTTCAGGGGGATTTTGATATCGTTGGAGGAGAACCAACATTGACAGAAGGCGAAGTTATAAAGGTGGCAATGGATATTGTCAGGAAGTTCTTTGACTGGGATGCCTGTGAAATCCATGTCAACCATGCCCACATTTTGGATGCGATATGGTCATGGACTGGAGTTAAACAGGAATCTAAGCACGATGTGGCTAAGTTATTATCCTTGATATGTTCCTCATCTCC

Fln Alignment:

AllPine_a_c39241___LCHELRLPFACWIAANQKTSFRRYEISRVYRKGVGHSAPNPCLQGDFDIVGGEPTLTEGEVIKVAMDIVRKFFDWDACEIHVNHAHILDAIWSWTGVKQESKHDVAKLLSLICS
Q9LX30________________LCYELRLPFVHWISVNQKSSFKRYEISHVYRRAIGHSPPNPCLQADFDIVGGTLSLTEAEVLKVIVDITTHIFHRGSCDIHLNHGDLLDAIWSWAGIKAEHRRKVAELLSMMGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain