SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106929

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene106929
CGTCGTGACCTTGGCTGTCACTCAATTTTTATGGAGATGGATCTCAGTTGCATCTTGTTGTTGGTTCTGCTCTTCATCTTTGTGTTTACTTTGGTGAGAATTGTGATAAAAGTATGGTGGAAGCCTGGTCGAATGAAGAAGTATTTCGAATCGCAGGGTATCTCGGGTCCTCCATACAGACTGCTGTATGGAAACACAATGGAAGTCATTCAAATGATGAAGGAAACGTACTCGGCTCCCATGAAGTTCTCCCATGATATTTTGTCTCGAGTTCTTCCAGAGCTTCATGCTTGGACCAATACCTACGGCGAGATTTTCGTGTACTGGTTCGGTCCTGTGCCAAGAATTGTTATTCCCCAGCCAGAGTTGATCAGGGAGCTGCTGTGCAATAAATCAAAGCAGT

Ace file of the UniGene sp_v3.0_unigene106929

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9HWV8_POPTR	-	-	6.0e-23	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	GSVIVT00014650001; GSVIVT00014652001; VITISV_019082;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	2.0e-25	46%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	2.0e-25	46%
RefSeq	Populus trichocarpa	XP_002316010.1	cytochrome P450 [Populus trichocarpa]	1.0e-28	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 395 aas, your sequence is shorter than subject: 124 - 517

Fln protein: MEMDLSCILLLVLLFIFVFTLVRIVIKVWWKPGRMKKYFESQGISGPPYRLLYGNTMEVIQMMKETYSAPMKFSHDILSRVLPELHAWTNTYGEIFVYWFGPVPRIVIPQPELIRELLCNKSKQ

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTT_-_ATGGAGATGGATCTCAGTTGCATCTTGTTGTTGGTTCTGCTCTTCATCTTTGTGTTTACTTTGGTGAGAATTGTGATAAAAGTATGGTGGAAGCCTGGTCGAATGAAGAAGTATTTCGAATCGCAGGGTATCTCGGGTCCTCCATACAGACTGCTGTATGGAAACACAATGGAAGTCATTCAAATGATGAAGGAAACGTACTCGGCTCCCATGAAGTTCTCCCATGATATTTTGTCTCGAGTTCTTCCAGAGCTTCATGCTTGGACCAATACCTACGGCGAGATTTTCGTGTACTGGTTCGGTCCTGTGCCAAGAATTGTTATTCCCCAGCCAGAGTTGATCAGGGAGCTGCTGTGCAATAAATCAAAGCAGT

Fln Alignment:

AllPine_a_c38952___VWWKPGRMKKYFESQGISGPPYRLLYGNTMEVIQMMKETYSAPMKFSHDILSRVLPELHAWTNTYGEIFVYWFGPVPRIVIPQPELIRELLCNK
A9NWW9________________IWWKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGKDFIYWVGSKPRLNVPHPELIKEILSNK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
26	33			66	0.997476
28			33	66	0.997452
29		33	33	33	0.997745
32			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain