SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106915

Length: 500 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106915
TTTCTTGCTACTTGAAACGTAAAATGCCTCTTCAGGGTCGCTTATTCTTATCTGCGAGGATGCTAGGTTTCTATGCAAATCTCTTTGGACATAAAACCAAATTTTCCTTCCTGTGGGAAGATATAGAGGAAATAGTGGAGTTGCCTCCTTCCTTAGCATCAATGGGTAGTCCATCTCTGGTCATCTTCCTTCGCAGAGGCAGAGGCCTTGATGCTAGCCATGGTGCAAAGTACACAGATGACAAAGGAAGACTCAAGTTCCATTTTCAGTCATTTGTTTCCTACAATGTTGCATGCAGGACAATCATGGCACTTTGGAGGAATAGGGCACTGAGTCTTGAGCAGAAGATGCAAATAGTAGAGGATGAAGAACCGACAGATTCAGGGGATCTCCAAAATGAAGATTCTGGATATTTTTTGGGTGTCGAGGAAGCGAGCATGACCAAGGTCCATTCACAAACATTACCATTCAGCGTTGAGTCACTCATGGAGTTATATGAT

Ace file of the UniGene sp_v3.0_unigene106915 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 calcium/lipid-binding and GRAM domain containing protein [Arabidopsis thaliana] sp\|Q9ZVT9.4\|C2GR1_ARATH RecName: Full=C2 and GRAM domain-containing protein At1g03370 gb\|AAC72128.2\| Contains similarity to gb\|AB011110 KIAA0538 protein from Homo sapiens b	-	-	0.0	63%
FL-Next	sp=C2 and GRAM domain-containing protein At1g03370; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%

Source	Gene names
Sma3	At1g03370; At5g50170; F15K9.2; GSVIVT00015990001; OSIGBa0106G07.15; OSJNBa0022H21.21; OSJNBa0055N24.36; Os02g0199800; Os06g0297800; Os06g0607900; Os08g0492400; OsI_16308; OsI_22634; OsI_23655; OsI_29710; OsJ_15182; OsJ_21055; OsJ_21926; OsJ_27768; P0026H0

Source	GOs	Term	Type	e value	Identity
Sma3	pollen maturation	GO:0010152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	GRAM	IPR004182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03370.1	C2 calcium/lipid-binding and GRAM domain containing protein chr1:830968-834996 FORWARD LENGTH=1020	63%
RefSeq	Arabidopsis thaliana	NP_171836.3	C2 calcium/lipid-binding and GRAM domain containing protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002329933.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVT9

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 166 - 1020

Fln protein: SCYLKRKMPLQGRLFLSARMLGFYANLFGHKTKFSFLWEDIEEIVELPPSLASMGSPSLVIFLRRGRGLDASHGAKYTDDKGRLKFHFQSFVSYNVACRTIMALWRNRALSLEQKMQIVEDEEPTDSGDLQNEDSGYFLGVEEASMTKVHSQTLPFSVESLMELYD

Protein Length: 167

Fln nts: TTTCTTGCTACTTGAAACGTAAAATGCCTCTTCAGGGTCGCTTATTCTTATCTGCGAGGATGCTAGGTTTCTATGCAAATCTCTTTGGACATAAAACCAAATTTTCCTTCCTGTGGGAAGATATAGAGGAAATAGTGGAGTTGCCTCCTTCCTTAGCATCAATGGGTAGTCCATCTCTGGTCATCTTCCTTCGCAGAGGCAGAGGCCTTGATGCTAGCCATGGTGCAAAGTACACAGATGACAAAGGAAGACTCAAGTTCCATTTTCAGTCATTTGTTTCCTACAATGTTGCATGCAGGACAATCATGGCACTTTGGAGGAATAGGGCACTGAGTCTTGAGCAGAAGATGCAAATAGTAGAGGATGAAGAACCGACAGATTCAGGGGATCTCCAAAATGAAGATTCTGGATATTTTTTGGGTGTCGAGGAAGCGAGCATGACCAAGGTCCATTCACAAACATTACCATTCAGCGTTGAGTCACTCATGGAGTTATATGAT

Fln Alignment:

AllPine_a_c38935___SCYLKRKMPLQGRLFLSARMLGFYANLFGHKTKFSFLWEDIEEIVELPPSLASMGSPSLVIFLRRGRGLDASHGAKYTDDKGRLKFHFQSFVSYNVACRTIMALWRNRALSLEQKMQIVEDEEPTDSGDLQNEDSGYFLGVEEASMTKVHSQTLPFSVESLMELY
Q9ZVT9________________TCHLKRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLRPNRGLDARIGAKTHDEEGRLKFHFHSFVSFNVAQKTIMALWKAKSLTPEQKVQAVEEE---SEQKLQSEESGLFLGVDDVRFSEVFSLTLPVPVSFFMELF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain