SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106683

Length: 289 nt

UniGene Fasta

>sp_v3.0_unigene106683
AATGTAAATAATGGATTTGAAAGCTCGTATTGATGGTGATGCTCATGCATATGTTGTTGAAGCACGAGTTGATCGTGGCCATGGCCCTTTAGCTACTGCCATAGTACGTTCTGGAACACTAGTGCCTGGTCTTCACATTGTTGTTGGTGCTGAGTGGGGTAGGATAAGGGTTCTTCGTGATATGTCTGGTCGGCCTGTTCCATCAGTGGGCCCTTCATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTTCCATTAGCAGGAGATGAGATTATGGTAGTTTCCTCTGAGG

Ace file of the UniGene sp_v3.0_unigene106683

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os09g0515500 protein n=2 Tax=Oryza sativa RepID=Q69IM0_ORYSJ	-	-	2.0e-22	67%
FL-Next	sp=Translation initiation factor IF-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Sma3	Translation initiation factor IF-2	-	-	2.408e-11	-

Source	Gene names
Sma3	AT4g11160; At4g11160; F2P3.9; GSVIVT00022714001; OSJNBb0034B12.2; Os09g0515500; OsI_32038; OsJ_30008; P0450E05.27; PHYPADRAFT_184790; POPTRDRAFT_709212; RCOM_1690570;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor aIF-2, bacterial-like	IPR000178	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11160.1	Translation initiation factor 2, small GTP-binding protein chr4:6803846-6806726 FORWARD LENGTH=743	4.0e-25	55%
RefSeq	Arabidopsis thaliana	NP_192854.2	translation initiation factor IF-2 [Arabidopsis thaliana]	5.0e-25	55%
RefSeq	Populus trichocarpa	XP_002297989.1	predicted protein, partial [Populus trichocarpa]	4.0e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SHI1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 265 aas, your sequence is shorter than subject: 85 - 1026

Fln protein: M*IMDLKARIDGDAHAYVVEARVDRGHGPLATAIVRSGTLVPGLHIVVGAEWGRIRVLRDMSGRPVPSVGPSCLLRLKGFEGFH*

Protein Length: 86

Fln nts: AATGTAAATAATGGATTTGAAAGCTCGTATTGATGGTGATGCTCATGCATATGTTGTTGAAGCACGAGTTGATCGTGGCCATGGCCCTTTAGCTACTGCCATAGTACGTTCTGGAACACTAGTGCCTGGTCTTCACATTGTTGTTGGTGCTGAGTGGGGTAGGATAAGGGTTCTTCGTGATATGTCTGGTCGGCCTGTTCCATCAGTGGGCCCTTCATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTTCCATTAGCAGGAGATGAGATTATGGTAGTTTCCTCTGAGG

Fln Alignment:

AllPine_a_c38603___IMDLKARIDGDAHAYVVEARVDRGHGPLATAIVRSGTLVPGLHIVVGAEWGRIRVLRDMSGRPVPSVGPSCLLRLKG
Q9SHI1________________LQELKANPHRNAKGIVIEAGLDKAKGPFATFIVQKGTLKRGDVVVCGEAFGKVRALFDHSGERVDEAGPSIPVQVIG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
124	33		66		0.997452
147		33	66		0.997464
148	33		66		0.997464
150			66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain