SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106646

Length: 492 nt

UniGene Fasta

>sp_v3.0_unigene106646
TCTAAAAGAATTGGGCTTAGAGAGGGCTAGGAGATTTGGGTGGCCGAATACTTACACATTCACCAAAGCCATGGGAGACATGCTAGTAGAAAATCTGAGAGGAAATCTTCCAGTAGTGGTTCTCCGACCGAGTATTATTGAAAGCACTTTGGCAGAGCCCTTCCCTGGCTGGATGGAAGGCACCAGAACCATAGTGTCTCTGATAGTAGCATACGGAAAAGGACGAATCTCATCCTTCTTAGCCGACCCAAACCTCATCCTTGACGTGATTCCAGCAGATATGGTTGTAAACACGATGATAGTAGCTATTGCCACACATGCTTCCCAGAATGGTCTCTTTATTTATCACTCGGCATCATCTACTGGAAACCCGTTGCGTTGCTCTGCTGCAACGGACGCCGCTTATAATTACTTTTCGAAGAATCCTTGTGTTGGCAAAGATGGAAACATAGTTCAGGTAAAACCGCCGCTGTTTCTGGAGAGCATGACATT

Ace file of the UniGene sp_v3.0_unigene106646

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative fatty acyl-CoA reductase 4 [Arabidopsis thaliana] dbj\|BAE99400.1\| acyl CoA reductase - protein [Arabidopsis thaliana] gb\|ACF22894.1\| At3g44540 [Arabidopsis thaliana] gb\|AEE77913.1\| putative fatty acyl-CoA reductase 4 [Arabidopsis thaliana]	-	-	1.4013e-45	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Male sterility protein, putative	-	-	1.992e-15	-

Source	Gene names
Sma3	AT3G44540; AT4g33790; At3g11980; At3g44540; At3g44550; At3g44560; At3g56700; At4g33790; At5g22420; At5g22500; F14L2_100; F14L2_110; F14L2_90; GSVIVT00001317001; GSVIVT00011405001; GSVIVT00011407001; GSVIVT00025442001; LOC_Os03g07140; MS2; MS2-F; OJ1150_A1

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	fatty-acyl-CoA reductase (alcohol-forming) activity	GO:0080019	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Male sterility	IPR004262	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G44540.1	FAR4 fatty acid reductase 4 chr3:16124079-16127769 FORWARD LENGTH=493	53%
RefSeq	Arabidopsis thaliana	NP_001030809.1	putative fatty acyl-CoA reductase 4 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002305562.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 163 - 510

Fln protein: LKELGLERARRFGWPNTYTFTKAMGDMLVENLRGNLPVVVLRPSIIESTLAEPFPGWMEGTRTIVSLIVAYGKGRISSFLADPNLILDVIPADMVVNTMIVAIATHASQNGLFIYHSASSTGNPLRCSAATDAAYNYFSKNPCVGKDGNIVQVKPPLFLESMT

Protein Length: 164

Fln nts: TCTAAAAGAATTGGGCTTAGAGAGGGCTAGGAGATTTGGGTGGCCGAATACTTACACATTCACCAAAGCCATGGGAGACATGCTAGTAGAAAATCTGAGAGGAAATCTTCCAGTAGTGGTTCTCCGACCGAGTATTATTGAAAGCACTTTGGCAGAGCCCTTCCCTGGCTGGATGGAAGGCACCAGAACCATAGTGTCTCTGATAGTAGCATACGGAAAAGGACGAATCTCATCCTTCTTAGCCGACCCAAACCTCATCCTTGACGTGATTCCAGCAGATATGGTTGTAAACACGATGATAGTAGCTATTGCCACACATGCTTCCCAGAATGGTCTCTTTATTTATCACTCGGCATCATCTACTGGAAACCCGTTGCGTTGCTCTGCTGCAACGGACGCCGCTTATAATTACTTTTCGAAGAATCCTTGTGTTGGCAAAGATGGAAACATAGTTCAGGTAAAACCGCCGCTGTTTCTGGAGAGCATGACATT

Fln Alignment:

AllPine_a_c38550___LKELGLERARRFGWPNTYTFTKAMGDMLVENLRGNLPVVVLRPSIIESTLAEPFPGWMEGTRTIVSLIVAYGKGRISSFLADPNLILDVIPADMVVNTMIVAIATHASQNGLFIYHSASSTGNPLRCSAATDAAYNYFSKNPCVGKDGNIVQVKPPLFLESMT
B8LRT2________________LKELGLERARRFGWPNTYSFTKAMGEMVVENRRENLPVVILRPTIIESTLAEPFPGWMEGTRTMDTFIVGYGKGRISFFLGDPELFLD-IPADMVVNQMMVAMATHAYQNDLFIYHVASSVGNPLRYSLLSDVAYNYFSKNPCVSNDGKIIRVKEMRFLKSMS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
388		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain