SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106624

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene106624
GTGGGCGATCATCGTTACAGACGGAGGACTCCTTGCCCATTGGAGGCCCTGGTTTTTCCAGAACTGTATATTGCAATGAACCAGAGAAGCACCAAGAGAAGCCCTATAGGCCCAACTATGTGTCCACTACCAAGTATAATTTGGCGACTTTCTTTCCAAAGGCTCTGTTTGAGCAATTCAGAAGGGTTGCGAATATATACTTTCTTTTCGCAGCGGCCTTGTCTCTCACTCCCTTGGCACCTTTTAGCGCTTCAAGTTTGATTGCACCACTGGTGTTTGTTGTTGGAGTCAGTATGGTAAAGGAGGGAATCGAAGACTGGAACCGCTTCTTGCAGGATAAGGAGTGAATAATCGAATTGTCAAAGT

Ace file of the UniGene sp_v3.0_unigene106624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipid-translocating ATPase [Arabidopsis thaliana] sp\|Q9SGG3.1\|ALA5_ARATH RecName: Full=Putative phospholipid-transporting ATPase 5; Short=AtALA5; AltName: Full=Aminophospholipid flippase 5 gb\|AAG51844.1\|AC010926_7 putative P-type transporting ATPas	-	-	4.0e-38	66%
FL-Next	sp=Putative phospholipid-transporting ATPase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	Aminophospholipid ATPase	-	-	5.039e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	-

Source	Gene names
Sma3	ALA1; ALA10; ALA11; ALA12; ALA2; ALA3; ALA4; ALA5; ALA6; ALA7; ALA8; ALA9; At1g13210; At1g17500; At1g26130; At1g54280; At1g59820; At1g68710; At1g72700; At3g13900; At3g25610; At3g27870; CHLREDRAFT_172401; CHLREDRAFT_190292; F14G11.10; F1L3.21; F20D21.10; F

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein chr1:27366910-27371491 FORWARD LENGTH=1228	1.4013e-45	66%
RefSeq	Arabidopsis thaliana	NP_177414.1	phospholipid-translocating ATPase [Arabidopsis thaliana]	1.4013e-45	66%
RefSeq	Populus trichocarpa	XP_002329063.1	aminophospholipid ATPase, partial [Populus trichocarpa]	3.99931e-42	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGG3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1084 aas, your sequence is shorter than subject: 115 - 1228

Fln protein: GRSSLQTEDSLPIGGPGFSRTVYCNEPEKHQEKPYRPNYVSTTKYNLATFFPKALFEQFRRVANIYFLFAAALSLTPLAPFSASSLIAPLVFVVGVSMVKEGIEDWNRFLQDKE*

Protein Length: 116

Fln nts: GTGGGCGATCATCGTTACAGACGGAGGACTCCTTGCCCATTGGAGGCCCTGGTTTTTCCAGAACTGTATATTGCAATGAACCAGAGAAGCACCAAGAGAAGCCCTATAGGCCCAACTATGTGTCCACTACCAAGTATAATTTGGCGACTTTCTTTCCAAAGGCTCTGTTTGAGCAATTCAGAAGGGTTGCGAATATATACTTTCTTTTCGCAGCGGCCTTGTCTCTCACTCCCTTGGCACCTTTTAGCGCTTCAAGTTTGATTGCACCACTGGTGTTTGTTGTTGGAGTCAGTATGGTAAAGGAGGGAATCGAAGACTGGAACCGCTTCTTGCAGGATAAGGAGTGAATAATCGAATTGTCAAAGT

Fln Alignment:

AllPine_a_c38522___SSLQTEDSLPIGGPGFSRTVYCNEPEKHQEKP--YRPNYVSTTKYNLATFFPKALFEQFRRVANIYFLFAAALSLTPLAPFSASSLIAPLVFVVGVSMVKEGIEDWNRFLQD
Q9SGG3________________ATLEGQDSQPIQGPGFSRTVFCNQPHMHKKKPLRYRSNYVSTTRYNLITFFPKSLYEQFHRAANLYFLVAAILSVFPLSPFNKWSMIAPLVFVVGLSMLKEALEDWRRFMQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain