SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106574

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106574
AATGTGCATTGCCAGGGTCTTTTCCTGAAAACTTCAGCTTTAAAACCATGAATTCAAAGAAGCTCACAATATCCTATCCATGTGTTATGTTGAATGTTGATGTTGCAAGGAACAATACAAATGACCAGTATCAGACCTTGGATGATCCTGTCCAACGGACATACAACACAAGGAGTGAGTGTTCTATTGAGTTTGAAGTAGATGGACCATACAAGGCGATGATTCTACCAGCCTCGAAGGAAGAAGGTGTTTTAATTAAGAAGCGTTATGCTGTTTTCAATGATGATGGAACACTAGCTGAGCTTAAAGGTTTTGAAATAAAGAGGCGAGGTGAATTGAAGCTTATCAAAGTTTTCCAGGCTGAAGTGTTTGATAAATTTCTTGATGGGATGACATTAGAGGAATGCTACGCAGCAGTAGCCTCTGTGGCAAATCGTTACATT

Ace file of the UniGene sp_v3.0_unigene106574 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=2 Tax=Oryza sativa RepID=Q6K777_ORYSJ	-	-	0.0	87%
FL-Next	sp=DNA polymerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	88%
Sma3	DNA polymerase	-	-	4.748e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	5.288e-36	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	5.288e-36	%
Sma3	Pyrimidine metabolism	00240	5.288e-36	%
Sma3	Metabolic pathways	01100	5.288e-36	%

Source	Gene names
Sma3	At1g08260; At2g27120; CHLREDRAFT_9481; GSVIVT00022048001; MICPUCDRAFT_51203; MICPUN_63095; OSJNBa0001A11.28; OSTLU_150; Os02g0511900; OsI_07377; OsJ_06880; Ot11g02010; PHATRDRAFT_52678; PHYPADRAFT_136896; POLE1; POPTRDRAFT_594813; RCOM_0792580; THAPSDRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	epsilon DNA polymerase complex	GO:0008622	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27120.1	POL2B, TIL2 DNA polymerase epsilon catalytic subunit chr2:11581223-11594346 FORWARD LENGTH=2138	83%
RefSeq	Arabidopsis thaliana	NP_180280.2	DNA polymerase epsilon subunit 1 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002328167.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1I9Y8

Fln msg: Distance to subject end: 1184 aas, your sequence is shorter than subject: 147 - 2182

Fln protein: CALPGSFPENFSFKTMNSKKLTISYPCVMLNVDVARNNTNDQYQTLDDPVQRTYNTRSECSIEFEVDGPYKAMILPASKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLDGMTLEECYAAVASVANRYI

Protein Length: 148

Fln nts: AATGTGCATTGCCAGGGTCTTTTCCTGAAAACTTCAGCTTTAAAACCATGAATTCAAAGAAGCTCACAATATCCTATCCATGTGTTATGTTGAATGTTGATGTTGCAAGGAACAATACAAATGACCAGTATCAGACCTTGGATGATCCTGTCCAACGGACATACAACACAAGGAGTGAGTGTTCTATTGAGTTTGAAGTAGATGGACCATACAAGGCGATGATTCTACCAGCCTCGAAGGAAGAAGGTGTTTTAATTAAGAAGCGTTATGCTGTTTTCAATGATGATGGAACACTAGCTGAGCTTAAAGGTTTTGAAATAAAGAGGCGAGGTGAATTGAAGCTTATCAAAGTTTTCCAGGCTGAAGTGTTTGATAAATTTCTTGATGGGATGACATTAGAGGAATGCTACGCAGCAGTAGCCTCTGTGGCAAATCGTTACATT

Fln Alignment:

AllPine_a_c38455___CALPGSFPENFSFKTMNSKKLTISYPCVMLNVDVARNNTNDQYQTLDDPVQRTYNTRSECSIEFEVDGPYKAMILPASKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLDGMTLEECYAAVASVANRYI
I1I9Y8________________CVLPGSFPENFTFKTTSGKKLTISYPCVMLNVDVARNNTNDQYQTLKDPVNKLYTTNSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLHGSTLEECYAAVASVANRWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain