SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106507

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene106507
ATGCAAATAATTCAGGCCTTATCAAATCCCCAAATTATGATGTTCTCAGCCACGATTCCACGCGACATAGAAGGTTTCTCATCACGAATACTTAAAAATCCTCTTTTTATATCTGCGGGCAAACCGAGCATTCCTAATGGAGCAGTCAAGCAGACAGTCATCTGGGTGGAATCCAAGAATAAGAAGCAAAAGTTATTTGACATCCTGAAAAGCAGCCAACATTTTAGGCCACCTGCTGTTGTGTTTGTGAATTCTAGACTGGGTTCCGATCTTCTGTCAGATGCTATAAAATGCATGACGAAATTGGAAGTGGCATCGATACACGGGGAGAAACCAATGGCGGAGAGGAGGCAAATTTTTAAAATCTTTCTT

Ace file of the UniGene sp_v3.0_unigene106507

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 41 n=4 Tax=Oryza sativa RepID=RH41_ORYSJ	-	-	1.0e-36	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	DEAD-box ATP-dependent RNA helicase 41	-	-	1.082e-09	-

Source	Gene names
Sma3	AT3G02065; At3g02065; F1C9.15; GSVIVT00037993001; LOC_Os02g10770; Os02g0201900; OsI_06281; OsJ_05798; P0419A09.31; POPTRDRAFT_1099426; RCOM_1443900; RH41;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02065.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:359136-360734 FORWARD LENGTH=505	9.99967e-42	55%
RefSeq	Arabidopsis thaliana	NP_850499.1	DEAD-box ATP-dependent RNA helicase 41 [Arabidopsis thaliana]	3.00018e-42	55%
RefSeq	Populus trichocarpa	XP_002320399.1	predicted protein [Populus trichocarpa]	1.00053e-42	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 124 - 408

Fln protein: MQIIQALSNPQIMMFSATIPRDIEGFSSRILKNPLFISAGKPSIPNGAVKQTVIWVESKNKKQKLFDILKSSQHFRPPAVVFVNSRLGSDLLSDAIKCMTKLEVASIHGEKPMAERRQIFKIFL

Protein Length: 125

Fln nts: ATGCAAATAATTCAGGCCTTATCAAATCCCCAAATTATGATGTTCTCAGCCACGATTCCACGCGACATAGAAGGTTTCTCATCACGAATACTTAAAAATCCTCTTTTTATATCTGCGGGCAAACCGAGCATTCCTAATGGAGCAGTCAAGCAGACAGTCATCTGGGTGGAATCCAAGAATAAGAAGCAAAAGTTATTTGACATCCTGAAAAGCAGCCAACATTTTAGGCCACCTGCTGTTGTGTTTGTGAATTCTAGACTGGGTTCCGATCTTCTGTCAGATGCTATAAAATGCATGACGAAATTGGAAGTGGCATCGATACACGGGGAGAAACCAATGGCGGAGAGGAGGCAAATTTTTAAAATCTTTCTT

Fln Alignment:

AllPine_a_c38362___QIMMFSATIPRDIEGFSSRILKNPLFISAGKPSIPNGAVKQTVIWVESKNKK----QKLFDILKSSQHFRPPAVVFVNSRLGSDLLSDAIKCMTKLEVASIHGEKPMAERRQIFKIF
A9NUU4________________QVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ-----AVIFCNTKRKVDWLTEKMR-SNNFTVSSMHGDMPQKERDAIMAEF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
267		66		33	0.997452
318	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain