SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106463

Length: 297 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106463
AAATGCCTATCTGCGGGCATAACTGTTCCGCAGTGCCAAGTATTCTTTAACGATCTTCCTGCTTCTGATTTCAACTCACTCTTTAGAATTTTGCCTCCTTTTTCTGTGAATACTGATTACCAGAATGAAGAGGGTGCGGTAGCTAGATCGTATTTCGCAACAGGGGTACCGGGTTCTTTCTATGGCAGGCTATTTCCAGACCATACTCTCCATTTCGTTCATTCATCATACAGTCTTCACTGGTTGTCTCAAGTTCCTCCTGAGATTTTGGAGAAAAATTCAGTGGCGTGGAACAAG

Ace file of the UniGene sp_v3.0_unigene106463 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana] gb\|AED96606.1\| IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	-	-	2.0e-22	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	SAMT	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Jasmonate O-methyltransferase.	EC:2.1.1.141	-	9.315e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		9.315e-27	%

Source	Gene names
Sma3	AbSAMT1; At1g19640; At5g55250; BSMT1; BSMT2; BSMT3; Bsmt; F14P1.3; GSVIVT00004653001; GSVIVT00006296001; GSVIVT00006297001; GSVIVT00014571001; GSVIVT00014573001; GSVIVT00014574001; GSVIVT00024874001; GSVIVT00024875001; GSVIVT00024877001; GSVIVT00024879001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	jasmonate O-methyltransferase activity	GO:0030795	Molecular Function	-
Sma3	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	jasmonic acid metabolic process	GO:0009694	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55250.1	IAMT1 IAA carboxylmethyltransferase 1 chr5:22407589-22410854 REVERSE LENGTH=386	7.0e-29	52%
RefSeq	Arabidopsis thaliana	NP_001078756.1	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	8.0e-29	52%
RefSeq	Populus trichocarpa	XP_002312469.1	predicted protein [Populus trichocarpa]	3.0e-29	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG0

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 99 - 370

Fln protein: KCLSAGITVPQCQVFFNDLPASDFNSLFRILPPFSVNTDYQNEEGAVARSYFATGVPGSFYGRLFPDHTLHFVHSSYSLHWLSQVPPEILEKNSVAWNK

Protein Length: 100

Fln nts: AAATGCCTATCTGCGGGCATAACTGTTCCGCAGTGCCAAGTATTCTTTAACGATCTTCCTGCTTCTGATTTCAACTCACTCTTTAGAATTTTGCCTCCTTTTTCTGTGAATACTGATTACCAGAATGAAGAGGGTGCGGTAGCTAGATCGTATTTCGCAACAGGGGTACCGGGTTCTTTCTATGGCAGGCTATTTCCAGACCATACTCTCCATTTCGTTCATTCATCATACAGTCTTCACTGGTTGTCTCAAGTTCCTCCTGAGATTTTGGAGAAAAATTCAGTGGCGTGGAACAAG

Fln Alignment:

AllPine_a_c38303___KCLSAGITVPQCQVFFNDLPASDFNSLFRILPPFSVNTDYQNEEGAVARSYFATGVPGSFYGRLFPDHTLHFVHSSYSLHWLSQVPPEILEKNSVAWNK
D5ADG0________________KYISVGNPVPQFQVFFNDLPTTDFNSLFRSLP-LSVMTDKNDP----ARSYFTAGVPGSFFGRLFPEKSLHFVHSSYSLHWLSQIPSEVLEKNSVTWNK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
50			66	33	0.997464
173		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain