SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106424

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene106424
ATGGGGGAATTGTCTCTCAAAATTGTGAGCAAGATCCAGGCCGGGGAAAGGTTCTCCGTCTACATTGTGGTGCCCATGTGGCCCGAGGGAATCCCGGACAGCGCATCAGTGCAGGCAATATTGCATTGGCAGCGAAAAACAATGGAGATGATGTATCTCGATATTGCATGCGCCCTTAGAGCAAAACAAATGGACGATGTGAACCCACGTGATTATCTCACCTTTTTCTGCTTGGCCAACCGGGAGAAGAAATTGGGAGGTGAGTACGTGCCCCCGCAAAGACCCGACGACGATGATACACACTACAAGAGAGCTCAAAACAAAAGACGCTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGACGATGAGTATATCATTGTTGGATCTGCAAATATCAACCAGCGCTCTATGGAT

Ace file of the UniGene sp_v3.0_unigene106424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase D n=5 Tax=Gossypium RepID=B5B3R1_GOSAR	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Phospholipase D	-	-	4.222e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycerophospholipid metabolism	00564	%
Sma3	Ether lipid metabolism	00565	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	A_IG005I10.13; At1g52570; At1g55180; At2g42010; At3g15730; At4g00240; At4g11830; At4g11840; At4g11850; At4g35790; At5g25370; F18G18.110; F4B14.60; F5I10.13; F6D8.21; F7A10.25; GSVIVT00000347001; GSVIVT00001073001; GSVIVT00007835001; GSVIVT00012363001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	clathrin-coated vesicle	GO:0030136	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	programmed cell death	GO:0012501	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-
Sma3	membrane lipid catabolic process	GO:0046466	Biological Process	-
Sma3	phosphatidylcholine metabolic process	GO:0046470	Biological Process	-
Sma3	phosphatidic acid metabolic process	GO:0046473	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G25370.1	PLDALPHA3 phospholipase D alpha 3 chr5:8804240-8807547 REVERSE LENGTH=820	76%
RefSeq	Arabidopsis thaliana	NP_197919.1	phospholipase D zeta [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002299756.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV59

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 140 - 482

Fln protein: MGELSLKIVSKIQAGERFSVYIVVPMWPEGIPDSASVQAILHWQRKTMEMMYLDIACALRAKQMDDVNPRDYLTFFCLANREKKLGGEYVPPQRPDDDDTHYKRAQNKRRFMIYVHSKMMIVDDEYIIVGSANINQRSMD

Protein Length: 141

Fln nts: ATGGGGGAATTGTCTCTCAAAATTGTGAGCAAGATCCAGGCCGGGGAAAGGTTCTCCGTCTACATTGTGGTGCCCATGTGGCCCGAGGGAATCCCGGACAGCGCATCAGTGCAGGCAATATTGCATTGGCAGCGAAAAACAATGGAGATGATGTATCTCGATATTGCATGCGCCCTTAGAGCAAAACAAATGGACGATGTGAACCCACGTGATTATCTCACCTTTTTCTGCTTGGCCAACCGGGAGAAGAAATTGGGAGGTGAGTACGTGCCCCCGCAAAGACCCGACGACGATGATACACACTACAAGAGAGCTCAAAACAAAAGACGCTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGACGATGAGTATATCATTGTTGGATCTGCAAATATCAACCAGCGCTCTATGGAT

Fln Alignment:

AllPine_a_c38251___ELSLKIVSKIQAGERFSVYIVVPMWPEGIPDSASVQAILHWQRKTMEMMYLDIACALRAKQMDDVNPRDYLTFFCLANREKKLGGEYVPPQRPDDDDTHYKRAQNKRRFMIYVHSKMMIVDDEYIIVGSANINQRSMD
A9NV59________________ELSLKIVSKIEAGEQFRVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALRAKQIYDADPRDYLTFFCLANREVKKNGEYMPQVEP-EEDSDYKRAQQNRRFMIYVHAKMMIVDDEYILIGSANINQRSMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain