SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106402

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene106402
GTTCTCGACACTGCAGCTGGTGTCTGGTGTGACACTAAGTCTGTTGTTACCAGCCCTCGGACAGGAAGATACAGTGCAGATGCAGCTGGCGGGATGCATCAGTAGAGCTTACAAGGCGCTGTCGTCATGCTGCAGCAGCTGTTGGTGACCTAATTTTATTTATGGTGGACTGCGTGGGGTAATTTGCTCTGAGACTGCCCA

Ace file of the UniGene sp_v3.0_unigene106402

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase BSL2 n=9 Tax=rosids RepID=BSL2_ARATH	-	-	6.0e-18	100%
FL-Next	sp=Serine/threonine-protein phosphatase BSL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	100%
Sma3	Serine/threonine protein phosphatase	-	-	4.847e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.955e-17	-

Source	Gene names
Sma3	AT1G08420; At1g08420; At2g27210; BSL2; BSL3; GSVIVT00002351001; GSVIVT00002632001; GSVIVT00007485001; LOC_Os03g44500; LOC_Os12g42310; Os03g0646900; Os12g0617900; OsI_12812; OsI_39138; OsJ_11899; OsJ_21718; PHYPADRAFT_149218; PHYPADRAFT_162447; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08420.1	BSL2 BRI1 suppressor 1 (BSU1)-like 2 chr1:2649959-2656564 FORWARD LENGTH=1018	2.0e-20	100%
RefSeq	Arabidopsis thaliana	NP_172318.1	serine/threonine-protein phosphatase BSL2 [Arabidopsis thaliana]	3.0e-20	100%
RefSeq	Populus trichocarpa	XP_002313501.1	predicted protein, partial [Populus trichocarpa]	3.0e-19	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJF0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 93 and 93, and overlapping frame ERROR between 155 and 155, Distance to subject end: 571 aas, your sequence is shorter than subject: 67 - 1018

Fln protein: VLDTAAGVWCDTKSVVTSPRTGRYSADAAGxxASVELTRRCRHAAAAVGDxxxIYGGLRGVICSETA

Protein Length: 68

Fln nts: GTTCTCGACACTGCAGCTGGTGTCTGGTGTGACACTAAGTCTGTTGTTACCAGCCCTCGGACAGGAAGATACAGTGCAGATGCAGCTGGCxxxxxxGCATCAGTAGAGCTTACAAGGCGCTGTCGTCATGCTGCAGCAGCTGTTGGTGACCTxxxxxxTATTTATGGTGGACTGCGTGGGGTAATTTGCTCTGAGACTGCCCA

Fln Alignment:

AllPine_a_c38219___VLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFIYGGLRG
Q9SJF0________________VLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFIYGGLRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain