SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106343

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene106343
ATGGGGTGTCCTAACCTTGGCAGCGGCAGTTATGCCCATCATGGGCCTTTGTGAGCTGGGGAACTGCCCTCAGACAACTGGCTGTGGTGTACTGAGAGGCAGCGCAAGGCCTGCTATAGGGGTCCGGATCAACCTGGGCTCATTTTACTTCCTTGGCACTCCGGTGGCCGTGGCTCTGGCATTCTGGTACAAGATTGGCTTT

Ace file of the UniGene sp_v3.0_unigene106343

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein novel ion carrier-2 [Arabidopsis thaliana] gb\|AAF43240.1\|AC012654_24 Contains similarity to the ZF14 mRNA from Arabidopsis thaliana gb\|AB028198; It is a member of the uncharacterized membrane protein family PF\|01554 gb\|AAG52224.1\|AC021665_7 hypoth	-	-	2.0e-24	79%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	86%
Sma3	Multidrug resistance pump, putative	-	-	2.636e-20	-

Source	Gene names
Sma3	AT4g23030; AT4g29140; At1g58340; At1g71870; At2g38510; At4g23030; At4g29140; At5g19700; At5g49130; At5g52050; At5g52050/MSG15_13; F14O23.25; F17M19.2; F19B15.170; F19C14.5; F7H19.220; GSVIVT00001094001; GSVIVT00001728001; GSVIVT00007400001; GSVIVT00015036

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G71870.1	MATE efflux family protein chr1:27032456-27034895 REVERSE LENGTH=510	3.0e-31	79%
RefSeq	Arabidopsis thaliana	NP_177332.1	protein novel ion carrier-2 [Arabidopsis thaliana]	4.0e-31	79%
RefSeq	Populus trichocarpa	XP_002326006.1	predicted protein, partial [Populus trichocarpa]	2.0e-29	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SPZ4

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 67 - 513

Fln protein: WGVLTLAAAVMPIMGLCELGNCPQTTGCGVLRGSARPAIGVRINLGSFYFLGTPVAVALAFWYKIGF

Protein Length: 68

Fln nts: ATGGGGTGTCCTAACCTTGGCAGCGGCAGTTATGCCCATCATGGGCCTTTGTGAGCTGGGGAACTGCCCTCAGACAACTGGCTGTGGTGTACTGAGAGGCAGCGCAAGGCCTGCTATAGGGGTCCGGATCAACCTGGGCTCATTTTACTTCCTTGGCACTCCGGTGGCCGTGGCTCTGGCATTCTGGTACAAGATTGGCTTT

Fln Alignment:

AllPine_a_c38133___VLTLAAAVMPIMGLCELGNCPQTTGCGVLRGSARPAIGVRINLGSFYFLGTPVAVALAFWYKIGF
D8SPZ4________________VLALTAAVMPLIGLCELGNCPQTTACGVLRGTARPAIGARINLGSFYFLGTPVAVALAFWFKVGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain