SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106308

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene106308
CAGCTCGGATGTGTTCAGCTTCGGGGTTCTGCTGTTGGAGGTAGCATGCGGAAAGAAGCCCGCTGATCCATCGAAGGATGCCAAGCCTATGGTTTTGGTGGATTGGGTGTGGAAGCTTCACATGGAGGGGAGGCTGATGGAGGCATCGGATCCAAAGCTGGGTCAGGCATATGATGTGGGCGAGATGGAGAAGTTGCTGAAATTGGGGTTGTTGTGTTCTCATCCAGAGCCGGAGAACAGGCTGGGGATACGCCATGTCTGTGAAATATTGGAAGGCGAAGCTCCTCTTCCCGACATCTGCATGGGTTGGTTAGACGTAAGTATTATGTGTTCTGAACCCATAGCTG

Ace file of the UniGene sp_v3.0_unigene106308

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbohydrate binding protein n=1 Tax=Zea mays RepID=B6SWP8_MAIZE	-	-	3.0e-14	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Lectin-like receptor kinase 7	-	-	5.123e-11	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; At4g02410; At4g02420; GSVIVT00021360001; GSVIVT00029340001; GSVIVT00029342001; GSVIVT00029344001; LecRK7; POPTRDRAFT_677145; POPTRDRAFT_762394; RCOM_0733210; T14P8.3; T14P8.4; VITISV_007901; VITISV_042399;

Source	GOs	Term	Type	Identity
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02420.1	Concanavalin A-like lectin protein kinase family protein chr4:1064363-1066372 REVERSE LENGTH=669	8.0e-18	51%
RefSeq	Arabidopsis thaliana	NP_567234.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	1.0e-17	51%
RefSeq	Populus trichocarpa	XP_002298812.1	predicted protein [Populus trichocarpa]	1.0e-15	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 115 - 704

Fln protein: SSDVFSFGVLLLEVACGKKPADPSKDAKPMVLVDWVWKLHMEGRLMEASDPKLGQAYDVGEMEKLLKLGLLCSHPEPENRLGIRHVCEILEGEAPLPDICMGWLDVSIMCSEPIA

Protein Length: 116

Fln nts: CAGCTCGGATGTGTTCAGCTTCGGGGTTCTGCTGTTGGAGGTAGCATGCGGAAAGAAGCCCGCTGATCCATCGAAGGATGCCAAGCCTATGGTTTTGGTGGATTGGGTGTGGAAGCTTCACATGGAGGGGAGGCTGATGGAGGCATCGGATCCAAAGCTGGGTCAGGCATATGATGTGGGCGAGATGGAGAAGTTGCTGAAATTGGGGTTGTTGTGTTCTCATCCAGAGCCGGAGAACAGGCTGGGGATACGCCATGTCTGTGAAATATTGGAAGGCGAAGCTCCTCTTCCCGACATCTGCATGGGTTGGTTAGACGTAAGTATTATGTGTTCTGAACCCATAGCTG

Fln Alignment:

AllPine_a_c38088___SSDVFSFGVLLLEVACGXXXXXXXXXXXXMVLVDWVWKLHMEGRLMEASDPKLGQAYDVXXXXXXXXXXXXCSHPEPENRLGIRHVCEILEGEAPLPDICMGWLDVSIMCSEP
B8LLJ6________________SSDVFSFGVLLLEVTCGKRPADPLNDAKRMVLVEWVWKLHTEGRLVDASDPNLGKAYDMCQIEKVLKLGLLCCNPEPQSRLGMRHVCQILEGEAPLPDLRMASFNACIMGCYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain