SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106303

Length: 415 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106303
GGAACAGCAGCCTAGTCTGTAGCCAGTCCTGCTGGCTCTAATGTGGCTGTGGATGCCTCAAGGCTGAAGCCTAGAGTTGAGGAAAGGAATGTATACTGGGTTCTCAAAGAGGAGTTCAGGGCTGGAATCAATCCTCAGGAGAAAGCATGGTCTAAGGTTTTCTTGTGCTGTGGGCGCTCTGTACTGACAGGTAACATAACAGCCAATCCTGAAATGAAATGCAAATACGCTGAGAGCCAGCTTGTATGATTCTTAAGGTTCTGAATGCACCGATGGGCTCTATACTGACAGAATCATTGCTGTCCCGTGCCTATGATTCTCCCGCTCTCTCTTTGCGGGTCTAGTTACTGCCTTTCTCCTTGTCGATGACTCTGCGGGATGAAACGATTCAAGACAAGTCCATACTCGCTATCGG

Ace file of the UniGene sp_v3.0_unigene106303 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferredoxin-nitrite reductase n=1 Tax=Lotus japonicus RepID=Q9FY16_LOTJA	-	-	8.0e-08	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Nitrite reductase	-	-	1.116e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ferredoxin--nitrite reductase.	EC:1.7.7.1	-	3.303e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		3.303e-13	%

Source	Gene names
Sma3	GSVIVT00036600001; NIR; NIR1; Nii1; PHYPADRAFT_193361; PpNii1; RCOM_0813440; nir;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	ferredoxin-nitrite reductase activity	GO:0048307	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ90

Fln msg: your sequence is shorter than subject: 83 - 127

Fln protein: GTAA*SVASPAGSNVAVDASRLKPRVEERNVYWVLKEEFRAGINPQEKAWSKVFLCCGRSVLTGNITANPEMKCKYAESQLV*

Protein Length: 84

Fln nts: GGAACAGCAGCCTAGTCTGTAGCCAGTCCTGCTGGCTCTAATGTGGCTGTGGATGCCTCAAGGCTGAAGCCTAGAGTTGAGGAAAGGAATGTATACTGGGTTCTCAAAGAGGAGTTCAGGGCTGGAATCAATCCTCAGGAGAAAGCATGGTCTAAGGTTTTCTTGTGCTGTGGGCGCTCTGTACTGACAGGTAACATAACAGCCAATCCTGAAATGAAATGCAAATACGCTGAGAGCCAGCTTGTATGA___TTCTTAAGGTTCTGAATGCACCGATGGGCTCTATACTGACAGAATCATTGCTGTCCCGTGCCTATGATTCTCCCGCTCTCTCTTTGCGGGTCTAGTTACTGCCTTTCTCCTTGTCGATGACTCTGCGGGATGAAACGATTCAAGACAAGTCCATACTCGCTATCGG

Fln Alignment:

AllPine_a_c38083___GTAA*SVASPAGSNVAVDASRLKPRVEERNVYWVLKEEFRAGINPQEK
A9NQ90________________GRTAKAVASPAGSQVAVDASRLEPRVEERDGYWVLKEEFRAGINPQEK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
152			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain