SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106301

Length: 554 nt

UniGene Fasta

>sp_v3.0_unigene106301
AATGTGTGCATTTTCCCAAGACAAGAAGGATTAAGGTACAGCTCAGTCGGAAAATGTATTTGGTCGTGACCGTTTCACTTGTCAGTATTGTGGTTCCAAGAATAATTTGACAATTGACCATGTTTTCCTGCTTCTCGGGGAGGAAAATGGATCTGGGAAAATTTGGTTACTGCTTGCAACGAATGCAATTCAAAGAAAGGCCGCAAAACCCTGGAGGAGGCAGAAATGAAACTGATTAGGACTCCTAAGGCACCTAAAGATCATGATGCGTGGGGTATACCTTTAACATATGCAACTTACAAGCTGCTGAAGTATCGAGAAAGGATGCCCGATGAGTGGAATGATTACATATCTAAACCATTGTTTGGGTCATGATATTTATTACTGTTCCGGATGTAAAATAGGCGTTCTGCTTGGTTTCTTTCATAATATGCCAAGCTAGTAAGATATCGATTGTATAAAATAGTATAATACCAGATCAAATCCAACAGAAATAGCCTCCAACTTGCTCTGTGACTTTCACATCTGTGTAATCGAACATGTAACTTGGATTA

Ace file of the UniGene sp_v3.0_unigene106301

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endonuclease, putative n=1 Tax=Ricinus communis RepID=B9SHH8_RICCO	-	-	2.0e-30	60%
FL-Next	tr=Endonuclease, putative; Ricinus communis (Castor bean).	-	-	0.0	68%

Source	Gene names
Sma3	At2g23840; GSVIVT00025489001; MtrDRAFT_AC167711g42v2; OSJNBa0050F10.26; Os07g0170200; OsI_25053; OsJ_23253; PHYPADRAFT_16947; POPTRDRAFT_1096807; POPTRDRAFT_248605; RCOM_1121850;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	HNH endonuclease	IPR002711	-	0.0	-
Sma3	HNH nuclease	IPR003615	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23840.1	HNH endonuclease chr2:10153982-10155600 REVERSE LENGTH=284	2.0e-30	55%
RefSeq	Arabidopsis thaliana	NP_179964.2	HNH endonuclease [Arabidopsis thaliana]	2.0e-30	55%
RefSeq	Populus trichocarpa	XP_002325827.1	predicted protein, partial [Populus trichocarpa]	4.0e-31	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SHH8

Fln msg: Separated hits, possible frame ERROR between 124 and 127, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 125 - 275

Fln protein: MCAFSQDKKD*GTAQSENVFGRDRFTCQYCGSKNNLTIDHxxPASRGGKWIWENLVTACNECNSKKGRKTLEEAEMKLIRTPKAPKDHDAWGIPLTYATYKLLKYRERMPDEWNDYISKPLFGS*

Protein Length: 126

Fln nts: AATGTGTGCATTTTCCCAAGACAAGAAGGATTAAGGTACAGCTCAGTCGGAAAATGTATTTGGTCGTGACCGTTTCACTTGTCAGTATTGTGGTTCCAAGAATAATTTGACAATTGACCATGTxxxTCCTGCTTCTCGGGGAGGAAAATGGATCTGGGAAAATTTGGTTACTGCTTGCAACGAATGCAATTCAAAGAAAGGCCGCAAAACCCTGGAGGAGGCAGAAATGAAACTGATTAGGACTCCTAAGGCACCTAAAGATCATGATGCGTGGGGTATACCTTTAACATATGCAACTTACAAGCTGCTGAAGTATCGAGAAAGGATGCCCGATGAGTGGAATGATTACATATCTAAACCATTGTTTGGGTCATGATATTTATTACTGTTCCGGATGTAAAATAGGCGTTCTGCTTGGTTTCTTTCATAATATGCCAAGCTAGTAAGATATCGATTGTATAAAATAGTATAATACCAGATCAAATCCAACAGAAATAGCCTCCAACTTGCTCTGTGACTTTCACATCTGTGTAATCGAACATGTAACTTGGATTA

Fln Alignment:

AllPine_a_c38080___ENVFGRDRFTCQYCGSKNNLTIDHVxPASRGGKWIWENLVTACNECNSKKGRKTLEEAEMKLIRTPKAPKDHDAWGIPLTYATYKLLKYRERMPDEWNDYISKP
B9SHH8________________KNVLHRDNYTCQYCSSRENLTIDHVxPTARGGQWTWENLVTACSKCNSKKGQKTPEEANMKLIKVPKAPKEYDILAIPLTSAAIRMLRMRKGMPEEWRQYLARP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain