SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106255

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene106255
TCTCCAGTTTTCTCGGCAGTCTTGTGATCACTATAGTTCAGAAAGCAACCAAGGGAAGATGGTTTGTCAACAATTTAAACAGATCGAAATTGGATTATTTTTACTGGCTTTTAGCCATATTAGGCGCTATCAATCTATGTTTCTATGTTTATATCACACGCATATATACCTACAAGAAAGTGGTGAAACAAATTATATCTGATACAAGTAGCTCACCCTAAGCTTTTCGCAGGGGTCAAAGGGCGTGACGATATGTTACGTCTCCGTGGTTGCAAGGTGGATGGAGCATAGAGAACCGAAAAAGGCGCCTGATTTTGGTTGCTTTGCACAAGTTTGTTATGACATTTAACCTAAACTGGCACGATCTATCGCAGTAGATAGCTGGCAGTTAACC

Ace file of the UniGene sp_v3.0_unigene106255

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9RGA9_RICCO	-	-	1.0e-11	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54450.1	Major facilitator superfamily protein chr3:20158534-20161937 FORWARD LENGTH=555	1.0e-13	46%
RefSeq	Arabidopsis thaliana	NP_974431.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	2.0e-13	46%
RefSeq	Populus trichocarpa	XP_002327275.1	predicted protein [Populus trichocarpa]	2.0e-14	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: your sequence is shorter than subject: 73 - 407

Fln protein: SSFLGSLVITIVQKATKGRWFVNNLNRSKLDYFYWLLAILGAINLCFYVYITRIYTYKKVVKQIISDTSSSP*

Protein Length: 74

Fln nts: TCTCCAGTTTTCTCGGCAGTCTTGTGATCACTATAGTTCAGAAAGCAACCAAGGGAAGATGGTTTGTCAACAATTTAAACAGATCGAAATTGGATTATTTTTACTGGCTTTTAGCCATATTAGGCGCTATCAATCTATGTTTCTATGTTTATATCACACGCATATATACCTACAAGAAAGTGGTGAAACAAATTATATCTGATACAAGTAGCTCACCCTAA___GCTTTTCGCAGGGGTCAAAGGGCGTGACGATATGTTACGTCTCCGTGGTTGCAAGGTGGATGGAGCATAGAGAACCGAAAAAGGCGCCTGATTTTGGTTGCTTTGCACAAGTTTGTTATGACATTTAACCTAAACTGGCACGATCTATCGCAGTAGATAGCTGGCAGTTAACC

Fln Alignment:

AllPine_a_c38021___SSFLGSLVITIVQKATKGR----WFVNNLNRSKLDYFYWLLAILGAINLCFYVYITRIYTYKKV
B8LQ68________________ASFLNGLVITLVESMSKRGGHEGWLVNNLNRCKLEYFYWLLAIFSAINLCCYVFIANIYNYKKV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain