SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106101

Length: 243 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106101
CTCAAGAATGGGAAGGTGACGTGACTATCGTTATGCCTGCTACTCTTGCACAGTTTGCTAAAATCATTCAAAATCCATCTCAAGTGGAGCTTCAAAAGGCTATCAATCAAGGGAGGAGATGTGCCTGGGAAAAGCTCTCTGCAATCAAGGCAAACTGTGGAATTGAGCTTGTATTGGATGAGTGTGTGTCCTTTCTGAATCATATGCGCAGAGTGAAGAGAAATGCAGAAAGGGCTACCTCAC

Ace file of the UniGene sp_v3.0_unigene106101 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	triacylglycerol lipase SDP1 [Arabidopsis thaliana] sp\|Q9LZA6.1\|SDP1_ARATH RecName: Full=Triacylglycerol lipase SDP1; AltName: Full=Protein SUGAR-DEPENDENT 1 emb\|CAB85524.1\| putative protein [Arabidopsis thaliana] gb\|AAM97135.1\| putative protein [Arabidops	-	-	7.0e-31	77%
FL-Next	sp=Triacylglycerol lipase SDP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%

Source	Gene names
Sma3	At3g57140; At3g57140/F24I3_220; At5g04040; F24I3.220; F8F6_250; GSVIVT00025319001; LOC_Os03g59620; OSJNBa0028F23.4; OSJNBb0033J23.4; Os01g0762000; Os03g0810900; OsI_03832; OsI_14019; OsJ_03542; OsJ_13065; P0460E08.35; P0512C01.31; PHYPADRAFT_120017; PHYPA

Source	GOs	Term	Type	Identity
Sma3	monolayer-surrounded lipid storage body	GO:0012511	Cellular Component	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	triglyceride catabolic process	GO:0019433	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	0.0	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04040.1	SDP1 Patatin-like phospholipase family protein chr5:1090346-1093003 FORWARD LENGTH=825	5.0e-38	77%
RefSeq	Arabidopsis thaliana	NP_196024.1	triacylglycerol lipase SDP1 [Arabidopsis thaliana]	7.0e-38	77%
RefSeq	Populus trichocarpa	XP_002308909.1	predicted protein [Populus trichocarpa]	3.0e-40	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LZA6

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 80 - 825

Fln protein: QEWEGDVTIVMPATLAQFAKIIQNPSQVELQKAINQGRRCAWEKLSAIKANCGIELVLDECVSFLNHMRRVKRNAERATS

Protein Length: 81

Fln nts: CTCAAGAATGGGAAGGTGACGTGACTATCGTTATGCCTGCTACTCTTGCACAGTTTGCTAAAATCATTCAAAATCCATCTCAAGTGGAGCTTCAAAAGGCTATCAATCAAGGGAGGAGATGTGCCTGGGAAAAGCTCTCTGCAATCAAGGCAAACTGTGGAATTGAGCTTGTATTGGATGAGTGTGTGTCCTTTCTGAATCATATGCGCAGAGTGAAGAGAAATGCAGAAAGGGCTACCTCAC

Fln Alignment:

AllPine_a_c37811___QEWEGDVTIVMPATLAQFAKIIQNPSQVELQKAINQGRRCAWEKLSAIKANCGIELVLDECVSFLNHMRRVKRNAERATS
Q9LZA6________________QEWEGDVTVVMPATLAQYSKIIQNPTHVELQKAANQGRRCTWEKLSAIKSNCGIELALDDSVAILNHMRRLKKSAERAAT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
52	66		33		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain