SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106070

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106070
ACAGACTGGGAGACGGTCCGGCTCTAGTAACCGGAGTAGAGCTGCAGCTGTTCATAACCTATCTGAAAGGAGGCGTCGAGATAGAATAAATGAAAGGATGAGGGCTTTGCAAAATTAATACCCAACTCAAGCAAGACTGACAAGGCCTCTATGCTGGATGAGGCAATTGAGTACTTGAAACATCTCCAAGCACAACTGCAGATGATGATTCTGAGAAATGGAATGAACATCCCTCCCATGATGATGCCCTTGGGTATGCAGCAGCTGCAGATGTCTCTTTTGGCATCTCTAGGTCCTACAGGATTAGGCATGGAATGACTGGTGTTGGTCTTGGTATGGGGATGGGAATGATGGACATGAATTCAGTTGCAACAGGGCAATTGCCTATGGCACCAATGGCCCAACCCCTTCCTACGATAGGAAGCCATGCCATTCCAGGGTCGGTTCATCCAGCAACTTTTATTCAGCCCAATAT

Ace file of the UniGene sp_v3.0_unigene106070 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor SPATULA n=2 Tax=Arabidopsis RepID=SPT_ARATH	-	-	9.0e-10	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Helix-loop-helix DNA-binding domain containing protein, expressed	-	-	5.908e-06	-

Source	Gene names
Sma3	AP22.25; AT2G43010; AT3G59060; At2g43010; At3g59060; At4g00050; At4g36930; BHLH16; BHLH24; BHLH65; BHLH9; C7A10.430; EN102; EN103; EN108; EN99; F6N15.11; GSVIVT00016258001; GSVIVT00018844001; GSVIVT00019192001; LOC_Os03g56950; LOC_Os10g40740; OJ1548_F12.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	ethylene biosynthetic process	GO:0009693	Biological Process	-
Sma3	de-etiolation	GO:0009704	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	red light signaling pathway	GO:0010161	Biological Process	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36930.1	SPT basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr4:17414167-17415945 FORWARD LENGTH=373	3.0e-13	61%
RefSeq	Arabidopsis thaliana	NP_568010.1	transcription factor SPATULA [Arabidopsis thaliana]	4.0e-13	61%
RefSeq	Populus trichocarpa	XP_002327162.1	predicted protein [Populus trichocarpa]	9.0e-13	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAG8

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 53 - 173

Fln protein: MTGVGLGMGMGMMDMNSVATGQLPMAPMAQPLPTIGSHAIPGSVHPATFIQPN

Protein Length: 54

Fln nts: ACAGACTGGGAGACGGTCCGGCTCTAGTAACCGGAGTAGAGCTGCAGCTGTTCATAACCTATCTGAAAGGAGGCGTCGAGATAGAATAAATGAAAGGATGAGGGCTTTGCAAAATTAATACCCAACTCAAGCAAGACTGACAAGGCCTCTATGCTGGATGAGGCAATTGAGTACTTGAAACATCTCCAAGCACAACTGCAGATGATGATTCTGAGAAATGGAATGAACATCCCTCCCATGATGATGCCCTTGGGTATGCAGCAGCTGCAGATGTCTCTTTTGGCATCTCTAGGTCCTACAGGATTAGGCATGGA_-_ATGACTGGTGTTGGTCTTGGTATGGGGATGGGAATGATGGACATGAATTCAGTTGCAACAGGGCAATTGCCTATGGCACCAATGGCCCAACCCCTTCCTACGATAGGAAGCCATGCCATTCCAGGGTCGGTTCATCCAGCAACTTTTATTCAGCCCAATAT

Fln Alignment:

AllPine_a_c37775___NSVATGQLPMAPMAQPLPTIGSHAIPGSVHPATFIQPN
D5AAG8________________NSVAAGRVPMAPMAQPLPTIGSHAIPGSVHPATFIQPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain