SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106058

Length: 441 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene106058
AAACGAGGTCGTGACATCGGTGCATTGATAGTACGTCGCCAATTAAAATCTGAAAGCAATCTTTGCTTTGGAGAGGGTGGTGCAGGTACATGGAGTGATGGAAAATTGATCACCAAAATTGGAAAGAATAGTGACAATGTGCAAATGGTGCTAAAAACACTTATTCATTTTGGAGCTCCAGCATGTATATTGATTGATGGCAAACCACACTTGGGAACTGATAGATTGGTTCGCATACTACTCAACTTCCGGAAACATTTACAAGAAATGGGAGTTCAGATAATGTTTGGAACTCGAATGGATGACCTGCTAGTGAGGCAAACACAAGTTGTTGGAGTTCAGGTTTCTGATGCAGGAGGTGACTCAAGAACCAATCTGCGAAAGATTGAATCTGATGCAGTCGTTCTTGCTGTTGGTCATTCTGCTCGTTGATGTATTATG

Ace file of the UniGene sp_v3.0_unigene106058 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase-like protein [Arabidopsis thaliana] gb\|AEE85801.1\| FAD/NAD(P)-binding oxidoreductase-like protein [Arabidopsis thaliana]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%

Source	Gene names
Sma3	AT4g30720; At4g30720; CHLREDRAFT_108648; GSVIVT00017848001; MICPUCDRAFT_58256; MICPUN_84627; OSTLU_33225; Os05g0411200; OsI_19953; OsJ_18535; Ot08g03510; P0668F02.10; PHATRDRAFT_15935; PHYPADRAFT_226816; POPTRDRAFT_578714; RCOM_0444500; T10C21.70;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	dihydrolipoyl dehydrogenase activity	GO:0004148	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000759	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Conserved hypothetical protein CHP00275, flavoprotein HI0933-like	IPR004792	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Protein of unknown function DUF788, TMEM208	IPR008506	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30720.1	FAD/NAD(P)-binding oxidoreductase family protein chr4:14972212-14975461 REVERSE LENGTH=707	66%
RefSeq	Arabidopsis thaliana	NP_194801.4	FAD/NAD(P)-binding oxidoreductase-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002324523.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GSN1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 302 aas, your sequence is shorter than subject: 144 - 704

Fln protein: KRGRDIGALIVRRQLKSESNLCFGEGGAGTWSDGKLITKIGKNSDNVQMVLKTLIHFGAPACILIDGKPHLGTDRLVRILLNFRKHLQEMGVQIMFGTRMDDLLVRQTQVVGVQVSDAGGDSRTNLRKIESDAVVLAVGHSAR*

Protein Length: 145

Fln nts: AAACGAGGTCGTGACATCGGTGCATTGATAGTACGTCGCCAATTAAAATCTGAAAGCAATCTTTGCTTTGGAGAGGGTGGTGCAGGTACATGGAGTGATGGAAAATTGATCACCAAAATTGGAAAGAATAGTGACAATGTGCAAATGGTGCTAAAAACACTTATTCATTTTGGAGCTCCAGCATGTATATTGATTGATGGCAAACCACACTTGGGAACTGATAGATTGGTTCGCATACTACTCAACTTCCGGAAACATTTACAAGAAATGGGAGTTCAGATAATGTTTGGAACTCGAATGGATGACCTGCTAGTGAGGCAAACACAAGTTGTTGGAGTTCAGGTTTCTGATGCAGGAGGTGACTCAAGAACCAATCTGCGAAAGATTGAATCTGATGCAGTCGTTCTTGCTGTTGGTCATTCTGCTCGTTGATGTATTATG

Fln Alignment:

AllPine_a_c37756___KRGRDIGALIVRRQLKSESNLCFGEGGAGTWSDGKLITKIGKNSDNVQMVLKTLIHFGAPACILIDGKPHLGTDRLVRILLNFRKHLQEMGVQIMFGTRMDDLLVRQTQVVGVQVSDAGGDSRTNLRKIESDAVVLAVGHSAR
F6GSN1________________QRGRDIGALMVRRILQLESNFCFGEGGAGTWSDGKLVTRIGRNSGSVLAVMKTLVHFGAPESILVDGKPHLGTDRLIPLLRNFRQHLESLGVTIRFGTKVDDLVVEDANVVGVEVSDSREKSEHNSQKLRYDAVVLAVGHSAR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
215		66	33		0.997461
216		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain