SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105994

Length: 433 nt

UniGene Fasta

>sp_v3.0_unigene105994
ATGGGGGATTAAACTGGGTGCTTTGTCAATGGAATGGAGCTGCTGACTTCATCCCATGCCTCGACAATGCCAAGGCTATAAAACGGCTACGATCTCGTAGGCACATGGAACACAAAGAGAGGCATTGTCCTGCCAAAGTGGACTTACCGAGATGCCTTCTTCCTCTTCCTGAAGGTTACAGATCACACATTCTTTGGCCTAAAAGCAGGGACACGATCTGGTTAAAGAATGTTCCTCACACCAAACTTGTTGAATACAAGAAAGATCAGAATTGGGTTAGAATCTCTGGGGAGCTACTTGTATTTCCTGGAGGTGGAACGCAATTCAAAGATGGAGCCCTCAGCTACATCAACTTTATTGAAAAGGTCTTTCCGAATGTTGCATGGGGAACACGTACAAGGGTTGTGCTTGATGTGGGATGTGGTGTGGCTAG

Ace file of the UniGene sp_v3.0_unigene105994

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S456_RICCO	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Ankyrin-like protein	-	-	2.42e-19	-

Source	Gene names
Sma3	At1g04430; At1g04430/F19P19.11; At1g29470; At1g77260; At2g34300; At2g39750; At2g40280; At3g23300; At3g51070; At4g14360; At5g06050; At5g64030; B1065E10.47; B1088C09.16; F15D2.5; F18O21_40; F19P19.11; F24M12.110; GSVIVT00005700001; GSVIVT00006009001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr2:16825707-16828300 REVERSE LENGTH=589	64%
RefSeq	Arabidopsis thaliana	NP_565926.1	putative methyltransferase PMT23 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002315142.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: Distance to subject end: 386 aas, your sequence is shorter than subject: 143 - 637

Fln protein: GGLNWVLCQWNGAADFIPCLDNAKAIKRLRSRRHMEHKERHCPAKVDLPRCLLPLPEGYRSHILWPKSRDTIWLKNVPHTKLVEYKKDQNWVRISGELLVFPGGGTQFKDGALSYINFIEKVFPNVAWGTRTRVVLDVGCGVA

Protein Length: 144

Fln nts: ATGGGGGATTAAACTGGGTGCTTTGTCAATGGAATGGAGCTGCTGACTTCATCCCATGCCTCGACAATGCCAAGGCTATAAAACGGCTACGATCTCGTAGGCACATGGAACACAAAGAGAGGCATTGTCCTGCCAAAGTGGACTTACCGAGATGCCTTCTTCCTCTTCCTGAAGGTTACAGATCACACATTCTTTGGCCTAAAAGCAGGGACACGATCTGGTTAAAGAATGTTCCTCACACCAAACTTGTTGAATACAAGAAAGATCAGAATTGGGTTAGAATCTCTGGGGAGCTACTTGTATTTCCTGGAGGTGGAACGCAATTCAAAGATGGAGCCCTCAGCTACATCAACTTTATTGAAAAGGTCTTTCCGAATGTTGCATGGGGAACACGTACAAGGGTTGTGCTTGATGTGGGATGTGGTGTGGCTAG

Fln Alignment:

AllPine_a_c37669___ADFIPCLDNAKAIKRLRSRRH---MEHKERHCPAKVDLPRCLLPLPEGYRSHILWPKSRDTIWLKNVPHTKLVEYKKDQNWVRISGELLVFPGGGTQFKDGALSYINFIEKVFP----NVAWGTRTRVVLDVGCGVA
B8LKS3________________SELIPCLDR-NLIYQLKLKLELSLMEHYERHCPPTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain