SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105885

Length: 375 nt

UniGene Fasta

>sp_v3.0_unigene105885
TTCCAGCTTTCAGAGGATGGCATAGAGCTTCATTTTGCAACCAATCATTTAGGGCACTTCTTATTGACAAATCTTCTTTTAGGCAAGCTAAAGGCGACTGCTAAAGAGACAGGAATTGAGGGGAGAATTATCAATGTTGCATCTCAAGCTCATAGACATACATATCAAGAGGGTATTCGCTTGGATAAAATCAATGACCAATTAGGCTTCAAGCCCTATTTAGCCTATGGTCAGTCAAAGCTTGCAAATATCTTGCATGCAAATGAGCTGGCAAGGCATCTGAAGGAGGAAGGAGCCAATGTAACAGCCAATTCTTTACATCCAGGAGTAATAACTACTAATATTACACGTTACTGGAAAGCACTAGCTCTTCCT

Ace file of the UniGene sp_v3.0_unigene105885

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	short-chain dehydrogenase Tic32 [Pisum sativum]	-	-	4.0e-30	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Short-chain dehydrogenase, putative	-	-	1.862e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	5.409e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	5.409e-19	%
Sma3	Metabolic pathways	01100	5.409e-19	%
Sma3	Biosynthesis of secondary metabolites	01110	5.409e-19	%

Source	Gene names
Sma3	6J23.19; AT4g11410; AT4g23430; AT4g24050; At1g64590; At2g37540; At4g11410; At4g23420; At4g23430; At4g24050; At5g02540; At5g50130; F16G20.130; GSVIVT00000434001; GSVIVT00006681001; GSVIVT00016020001; GSVIVT00023046001; GSVIVT00037680001; GSVIVT00037681001;

Source	GOs	Term	Type	Identity
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02540.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:568609-570720 FORWARD LENGTH=331	3.0e-37	67%
RefSeq	Arabidopsis thaliana	NP_568102.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	4.0e-37	67%
RefSeq	Populus trichocarpa	XP_002318807.1	predicted protein [Populus trichocarpa]	2.0e-40	69%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP42

Fln msg: Distance to subject end: 71 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 125 - 200

Fln protein: FQLSEDGIELHFATNHLGHFLLTNLLLGKLKATAKETGIEGRIINVASQAHRHTYQEGIRLDKINDQLGFKPYLAYGQSKLANILHANELARHLKEEGANVTANSLHPGVITTNITRYWKALALP

Protein Length: 126

Fln nts: TTCCAGCTTTCAGAGGATGGCATAGAGCTTCATTTTGCAACCAATCATTTAGGGCACTTCTTATTGACAAATCTTCTTTTAGGCAAGCTAAAGGCGACTGCTAAAGAGACAGGAATTGAGGGGAGAATTATCAATGTTGCATCTCAAGCTCATAGACATACATATCAAGAGGGTATTCGCTTGGATAAAATCAATGACCAATTAGGCTTCAAGCCCTATTTAGCCTATGGTCAGTCAAAGCTTGCAAATATCTTGCATGCAAATGAGCTGGCAAGGCATCTGAAGGAGGAAGGAGCCAATGTAACAGCCAATTCTTTACATCCAGGAGTAATAACTACTAATATTACACGTTACTGGAAAGCACTAGCTCTTCCT

Fln Alignment:

AllPine_a_c37523___FQLSEDGIELHFAXXXXXXXXXXXXXXXXXXATAKETGIEGRIINVASQAHRHTYQEGIRLDKINDQLGFKPYLAYGQSKLANILHANELARHLKEEGANVTANSLHPGVITTNITRY
A9NP42________________FKLSEDGLEMQFATNHVGHFLLTHLLLDNMKKTAKVTGVEGRVVNLSSAGHFFTYGEGIRFNRINDESGYSDHKAYGQSKLANILHANELSRRLKEEGANVTANSVHPGCIMTNLMRY

SNPs (tot: 3)

Position	A %	G %	T %	Probability
184	25	75		0.996481
188	66	33		0.997452
189	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain