SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105823

Length: 509 nt

UniGene Fasta

>sp_v3.0_unigene105823
CCACGCCGAACAGTATGTTTGTTTTGGGATGATTCAGATGCTGAAGCTGCGCCTGCACCTTCGTGGTCTACTCTCCCAAACAGGTCCTTGCTATGCAGGCCACTTCAGCCTGATATTGGCCGCTGTACATGCTATATTGTGCGAGAACGATCTGACGGACTCGAAAATGCTTCGGTGTATTCATTGTATACTCATGAAGGGCACGGAAGACAGGATCGAAAACTTGCTGTTGCTCGTCACAGGAGAAAAGGTGGCCGGTCAGAATTCATCATTGCTCAAAGTTGTTTTGGCATCTTGTCAAAGTCAGATGAAGGTTATCTTGGAAAGGTGACAGCGAACCTCCTAGGATCGCGATATCACATTTGGGATCAGGGCAGTCCCCTAGATTCTCATGGAAGAGACACAAAACAACTTCTTGGAGTTGTAACATTTACGCCTACTGTGACTACATTGACTGGGAGCTTTAGGAGTATGCGGGTCTTCATTTCAAAGCAACAATCTATGCAATT

Ace file of the UniGene sp_v3.0_unigene105823

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubby-like protein 8 [Arabidopsis thaliana] gb\|AEE29407.1\| Tubby-like protein 8 [Arabidopsis thaliana]	-	-	3.0e-37	53%
FL-Next	sp=Tubby-like protein 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%

Source	Gene names
Sma3	At1g16070; GSVIVT00025235001; LOC_Os02g08310; Os02g0179400; OsI_06093; OsJ_05617; P0544B02.22; POPTRDRAFT_843435; RCOM_1442630; TULP13; TULP4; TULP8; VITISV_016672;

Source	GOs	Term	Type	e value	Identity
Sma3		GO:0045449	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tubby, C-terminal	IPR000007	-	0.0	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16070.2	-	1.4013e-45	61%
RefSeq	Arabidopsis thaliana	NP_173059.1	Tubby-like protein 8 [Arabidopsis thaliana]	1.4013e-45	61%
RefSeq	Populus trichocarpa	XP_002299159.1	predicted protein [Populus trichocarpa]	0.0	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9M8

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 169 - 397

Fln protein: PRRTVCLFWDDSDAEAAPAPSWSTLPNRSLLCRPLQPDIGRCTCYIVRERSDGLENASVYSLYTHEGHGRQDRKLAVARHRRKGGRSEFIIAQSCFGILSKSDEGYLGKVTANLLGSRYHIWDQGSPLDSHGRDTKQLLGVVTFTPTVTTLTGSFRSMRVFISKQQSMQ

Protein Length: 170

Fln nts: CCACGCCGAACAGTATGTTTGTTTTGGGATGATTCAGATGCTGAAGCTGCGCCTGCACCTTCGTGGTCTACTCTCCCAAACAGGTCCTTGCTATGCAGGCCACTTCAGCCTGATATTGGCCGCTGTACATGCTATATTGTGCGAGAACGATCTGACGGACTCGAAAATGCTTCGGTGTATTCATTGTATACTCATGAAGGGCACGGAAGACAGGATCGAAAACTTGCTGTTGCTCGTCACAGGAGAAAAGGTGGCCGGTCAGAATTCATCATTGCTCAAAGTTGTTTTGGCATCTTGTCAAAGTCAGATGAAGGTTATCTTGGAAAGGTGACAGCGAACCTCCTAGGATCGCGATATCACATTTGGGATCAGGGCAGTCCCCTAGATTCTCATGGAAGAGACACAAAACAACTTCTTGGAGTTGTAACATTTACGCCTACTGTGACTACATTGACTGGGAGCTTTAGGAGTATGCGGGTCTTCATTTCAAAGCAACAATCTATGCAATT

Fln Alignment:

AllPine_a_c37440___TLPNRSLLCRPLQPDIGRCTCYIVRERS-DGLENASVYSLYTHEGHGRQDRKLAVARHRRKGGRSEFIIAQSCFGILSKSDEGYLGKVTANLLGSRYHIWDQGSPLDSHGRDTKQXXXXXXXXXXXXXXXGSFRSMRVFISKQQSMQ
Q9S9M8________________TLPNRALLCKTLPLDVGRCTCLIVKEQSPEGLSHGSVYSLYTHEGRGRKDRKLAVAYHSRRNGKSIFRVAQNVKGLLCSSDESYVGSMTANLLGSKYYIWDKGVRVGSVGKMVKPLLSVVIFTPTITTWTGSYRRMRTLLPKQQPMQ

SNPs (tot: 3)

Position	C %	G %	T %	Probability
191	66	33		0.997452
192		33	66	0.997452
193	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain