SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105780

Length: 521 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene105780
GATCGTGCTGGGAGAGCTGTAGTGATAACAGGGATCCCCTTTGCTATGAAAACTGATCCAAAGGTTCGACTCAAACGTGAATATTTGGATGAACAAGCTCGGGTACAGACCAGGAATACAAAGGCATTGTCAGGGGAGGAATGGTATGTCCAGCAGGCAGCAAGAGCTGTGAATCAGGCAGTGGGACGTGTTATTCGTCACCGGCATGATTATGGTGCTATTCTACTATGTGATGAACGGTTTGCACATAATAACACACAAAATCAGATGTCGCTTTGGCTGCGACCTCATATTAAGTGTTACCCCAAGTTTGGAGATGCAGCATTTAGTTTGACACGGTTCTTTCGTGACAAACAGACAATTGATGTTTCAAAGAAAGAGTCATCTAGTATCTCAAACTCAGGCACTTCGAAACAAAGCATGGATACAAATTCGTTATCTAGTACTGAAACTGGTTTCGATTTGGGAAAGAATACACCTTGTCTAGAACCAAACCTATCAAAATCAACAAAAGGAACATT

Ace file of the UniGene sp_v3.0_unigene105780 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gb\|AEE36333.1\| regulator of telomere elongation helicase 1 [Arabidopsis thaliana]	-	-	3.0e-28	48%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	76%

Source	Gene names
Sma3	CHLREDRAFT_173679; F18B13.3; F19K16.9; GSVIVT00034419001; OSTLU_32894; OSTLU_40695; Os01g0592900; OsI_02661; OsJ_02439; Ot16g01230; P0710A02.28-1; PHATRDRAFT_24915; PHYPADRAFT_112245; POPTRDRAFT_846802; RCOM_0980890; THAPSDRAFT_32522;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Casein, alpha/beta	IPR001588	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-like, DEXD box c2 type	IPR006554	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	DEAD2	IPR010614	-	-
Sma3	DNA helicase (DNA repair), Rad3 type	IPR013020	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79950.1	RAD3-like DNA-binding helicase protein chr1:30073580-30079537 FORWARD LENGTH=1040	2.0e-33	57%
RefSeq	Arabidopsis thaliana	NP_178113.3	regulator of telomere elongation helicase 1 [Arabidopsis thaliana]	3.0e-33	57%
RefSeq	Populus trichocarpa	XP_002298143.1	predicted protein, partial [Populus trichocarpa]	8.00141e-43	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9RE00

Fln msg: STOP codon was not found. Distance to subject end: 18 aas, your sequence is shorter than subject: 173 - 765

Fln protein: DRAGRAVVITGIPFAMKTDPKVRLKREYLDEQARVQTRNTKALSGEEWYVQQAARAVNQAVGRVIRHRHDYGAILLCDERFAHNNTQNQMSLWLRPHIKCYPKFGDAAFSLTRFFRDKQTIDVSKKESSSISNSGTSKQSMDTNSLSSTETGFDLGKNTPCLEPNLSKSTKGT

Protein Length: 174

Fln nts: GATCGTGCTGGGAGAGCTGTAGTGATAACAGGGATCCCCTTTGCTATGAAAACTGATCCAAAGGTTCGACTCAAACGTGAATATTTGGATGAACAAGCTCGGGTACAGACCAGGAATACAAAGGCATTGTCAGGGGAGGAATGGTATGTCCAGCAGGCAGCAAGAGCTGTGAATCAGGCAGTGGGACGTGTTATTCGTCACCGGCATGATTATGGTGCTATTCTACTATGTGATGAACGGTTTGCACATAATAACACACAAAATCAGATGTCGCTTTGGCTGCGACCTCATATTAAGTGTTACCCCAAGTTTGGAGATGCAGCATTTAGTTTGACACGGTTCTTTCGTGACAAACAGACAATTGATGTTTCAAAGAAAGAGTCATCTAGTATCTCAAACTCAGGCACTTCGAAACAAAGCATGGATACAAATTCGTTATCTAGTACTGAAACTGGTTTCGATTTGGGAAAGAATACACCTTGTCTAGAACCAAACCTATCAAAATCAACAAAAGGAACATT

Fln Alignment:

AllPine_a_c37385___DRAGRAVVITGIPFAMKTDPKVRLKREYLDEQARVQTRNTKALSGEEWYXXXXXXXXXXXXXXVIRHRHDYGAILLCDERFAHNNTQNQMSLWLRPHIKCYPKFGDAAFSLTRFFRDKQTI
A9RE00________________DRSGRAVVVTGIPFAMKMDPKVRLKREFLDEQARSRITKHKVLTGEEWYVQQASRAVNQAVGRVIRHRNDYGAIILCDERFGQSGPQSQMSLWLRPYIKTYHKFGDAAFSLTRFFKDRDTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain