SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105547

Length: 705 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene105547 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA pseudourine synthase 2, chloroplastic n=2 Tax=Oryza sativa RepID=PUS2_ORYSJ	-	-	2.8026e-45	56%
FL-Next	sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	56%
Sma3	RNA-uridine isomerase 2	-	-	3.506e-09	-

Source	Gene names
Sma3	At1g76050; CHLREDRAFT_96859; GSVIVT00015501001; LOC_Os06g50360; MICPUCDRAFT_36187; OJ1540_H01.12; Os06g0717400; OsI_24484; OsJ_22675; P0481E08.45; P0541C02.12; POPTRDRAFT_642899; POPTRDRAFT_862377; PUS3; RCOM_1298450; T4O12.210; VITISV_034413;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	-
Sma3	Pseudouridine synthase, RluC/RluD, conserved site	IPR006224	-	-
Sma3	Pseudouridine synthase, RluC/RluD	IPR006225	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76050.2	Pseudouridine synthase family protein chr1:28540858-28542826 FORWARD LENGTH=430	55%
RefSeq	Arabidopsis thaliana	NP_177732.2	RNA pseudourine synthase 2 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002301949.1	predicted protein [Populus trichocarpa]	50%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain