SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105211

Length: 263 nt

UniGene Fasta

>sp_v3.0_unigene105211
GCAAGATGATTACAGCAAAGAGGAAATCAATTGGAGCTACATAGAATTCATTGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTCGGTGTAATTTCTCTCTTAGATGAAGCCTGCATGTTCCCAAAATCAACACATGAGACGTTTGCCACCAAGCTTTTTCACCACTTTGGGAATCATCAAAGATTCAGTAAGCCTAGGCTAGCACAAACAGACTTCACAGTTTCCCATTATGCTAGGTGAGGTGACCTATCAG

Ace file of the UniGene sp_v3.0_unigene105211

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA	-	-	8.0e-33	76%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	80%
Sma3	Myosin XI, putative	-	-	4.487e-23	-

Source	Gene names
Sma3	AT4g28710; AT4g33200; At1g17580; At2g20290; At2g31900; At2g33240; At3g58160; At4g33200; At5g20490; At5g43900; F16A16.180; F20D22.7; F4I10.130; F9D24.70; GSVIVT00003703001; GSVIVT00007440001; GSVIVT00007494001; GSVIVT00011761001; GSVIVT00016505001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	DNA topoisomerase type I activity	GO:0003917	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	actin filament binding	GO:0051015	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	DNA unwinding involved in replication	GO:0006268	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	actin filament-based movement	GO:0030048	Biological Process	-
Sma3	keratinization	GO:0031424	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Involucrin repeat	IPR000354	-	-
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase domain	IPR007807	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04600.1	XIA, ATXIA myosin XI A chr1:1262123-1272376 FORWARD LENGTH=1730	4.0e-39	73%
RefSeq	Arabidopsis thaliana	NP_171954.1	myosin XI A [Arabidopsis thaliana]	5.0e-39	73%
RefSeq	Populus trichocarpa	XP_002329057.1	predicted protein [Populus trichocarpa]	1.0e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KFH0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 966 aas, your sequence is shorter than subject: 83 - 1520

Fln protein: QDDYSKEEINWSYIEFIDNQDVLDLIEKKPVGVISLLDEACMFPKSTHETFATKLFHHFGNHQRFSKPRLAQTDFTVSHYAR*

Protein Length: 84

Fln nts: GCAAGATGATTACAGCAAAGAGGAAATCAATTGGAGCTACATAGAATTCATTGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTCGGTGTAATTTCTCTCTTAGATGAAGCCTGCATGTTCCCAAAATCAACACATGAGACGTTTGCCACCAAGCTTTTTCACCACTTTGGGAATCATCAAAGATTCAGTAAGCCTAGGCTAGCACAAACAGACTTCACAGTTTCCCATTATGCTAGGTGAGGTGACCTATCAG

Fln Alignment:

AllPine_a_c36583___QDDYSKEEINWSYIEFIDNQDVLDLIEKKPVGVISLLDEACMFPKSTHETFATKLFHHFGNHQRFSKPRLAQTDFTVSHYA
D7KFH0________________QEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVISLLDEACMFPKSTHETFSQKLFQTFKNHKRFAKPKLSRTDFTISHYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain