SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105191

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene105191
ATTGGTGCAGGGCCTTCTGGGCTAGCAGCTGCTAGGCATTTGCAGCGGCTAAATTGTCATGTAACTGTTTTGGAAGCACGAGATAGGGTAGGTGGAAGAGTTTATGGGATCGTTCAGCACTTTCAGTGCCAGTGGATCTAGGTGCTAGCATTATTACTGGTGTTGAGGGAGATGTGGCAACAGAAAGAAGACCGGATCCATCTGCATTGCTTTGTACACAGCTTGGCCTGGAGTTGACAGTGCTAA

Ace file of the UniGene sp_v3.0_unigene105191

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO	-	-	4.0e-25	89%
FL-Next	sp=Probable polyamine oxidase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%

Source	Gene names
Sma3	AOX2; AT4g16310; At4g16310; GSVIVT00014490001; HDMA1503; HDMA1504; HDMA904; HDMA905; LOC_Os10g38850; OSJNBa0053C23.16; OSJNBb0038A07.13; OSTLU_30688; Os10g0532100; OsI_34444; OsJ_32256; Ot20g00660; PHYPADRAFT_121891; PHYPADRAFT_169206; POPTRDRAFT_643019;

Source	GOs	Term	Type	e value	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000759	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	DEK, C-terminal	IPR014876	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16310.1	LDL3 LSD1-like 3 chr4:9218636-9224764 FORWARD LENGTH=1628	2.0e-25	78%
RefSeq	Arabidopsis thaliana	NP_193364.5	protein LSD1-like 3 [Arabidopsis thaliana]	3.0e-25	78%
RefSeq	Populus trichocarpa	XP_002307701.1	hypothetical protein POPTRDRAFT_73001 [Populus trichocarpa]	5.0e-27	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H191

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 382 aas, your sequence is shorter than subject: 47 - 497

Fln protein: IGAGPSGLAAARHLQRLNCHVTVLEARDRVGGRVYGIVQHFQCQWI*

Protein Length: 48

Fln nts: ATTGGTGCAGGGCCTTCTGGGCTAGCAGCTGCTAGGCATTTGCAGCGGCTAAATTGTCATGTAACTGTTTTGGAAGCACGAGATAGGGTAGGTGGAAGAGTTTATGGGATCGTTCAGCACTTTCAGTGCCAGTGGATCTAGGTGCTAGCATTATTACTGGTGTTGAGGGAGATGTGGCAACAGAAAGAAGACCGGATCCATCTGCATTGCTTTGTACACAGCTTGGCCTGGAGTTGACAGTGCTAA

Fln Alignment:

AllPine_a_c36549___IGAGPSGLAAARHLQRLNCHVTVLEARDRVGGRVY
Q8H191________________IGSGISGLAAARNLSEASFKVTVLESRDRIGGRIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain