SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105075

Length: 608 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene105075 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI	-	-	9.99967e-42	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Pyridoxine biosynthesis protein	-	-	1.11e-15	-

Source	Gene names
Sma3	A37; At2g38210; At2g38230; At3g16050; At5g01410; B1026C12.3; ER1; F16M14.14; F16M14.16; GIP2; GSVIVT00034397001; LOC_Os07g01020; LOC_Os10g01080; LOC_Os10g08220; LOC_Os11g48080; MICPUCDRAFT_24622; MICPUN_107893; MSL1.3; OJ1136E01.11; OSJNBa0046L02.5; OSJNB

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endomembrane system	GO:0012505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to lipid hydroperoxide	GO:0006982	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	pyridoxine biosynthetic process	GO:0008615	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	response to non-ionic osmotic stress	GO:0010335	Biological Process	-
Sma3	chlorophyll metabolic process	GO:0015994	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Vitamin B6 biosynthesis protein	IPR001852	-	0.0	-
Sma3	Indole-3-glycerol phosphate synthase	IPR013798	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01410.1	PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 Aldolase-type TIM barrel family protein chr5:172576-173505 REVERSE LENGTH=309	60%
RefSeq	Arabidopsis thaliana	NP_195761.1	Pyridoxal biosynthesis protein PDX1.3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002299701.1	predicted protein [Populus trichocarpa]	58%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain