SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104905

Length: 274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104905
GGCATATTGGCTAGGTTTTCAGATGCGGGTTCTTTGAAAAGCAATTGCACCCTAAATAGTTCCATGGTAGGGTTTTCAGCGGATTTTGAAATGGTACAACATCAGCTCCGAGGGGTGATCAGCATATTGGATGGGTGTTCCTTCAGGGTGACCAATTTTGACATGATTGAAGGGGTCGATGTTTACTGGTGGGGGGCTCATGGGGATGATTTTGAGAATTTGACTAGTGGGTTTATTTTATCAGAGGAGAAGCTGAATAAAACCTATAGACATT

Ace file of the UniGene sp_v3.0_unigene104905 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dopamine beta-monooxygenase, putative n=1 Tax=Ricinus communis RepID=B9RNX5_RICCO	-	-	4.0e-18	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00032699001; POPTRDRAFT_779106; RCOM_0921790; VITISV_031502;

Source	GOs	Term	Type	e value	Identity
Sma3	dopamine beta-monooxygenase activity	GO:0004500	Molecular Function	0.0	-
Sma3	histidine catabolic process	GO:0006548	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	DOMON domain	IPR005018	-	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	-
Sma3		IPR013050	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G54830.1	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein chr5:22273394-22276117 FORWARD LENGTH=907	4.0e-25	50%
RefSeq	Arabidopsis thaliana	NP_200294.1	DOMON and dopamine beta-monooxygenase N-terminal domain-containing protein [Arabidopsis thaliana]	5.0e-25	50%
RefSeq	Populus trichocarpa	XP_002324904.1	predicted protein [Populus trichocarpa]	4.0e-24	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H3I9

Fln msg: Distance to subject end: 768 aas, atg_distance in limit (1-15): atg_distance = 14, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 70 - 872

Fln protein: MVGFSADFEMVQHQLRGVISILDGCSFRVTNFDMIEGVDVYWWGAHGDDFENLTSGFILSEEKLNKTYRH

Protein Length: 71

Fln nts: GGCATATTGGCTAGGTTTTCAGATGCGGGTTCTTTGAAAAGCAATTGCACCCTAAATAGTTCCATGGTAGGGTTTTCAGCGGATTTTGAAATGGTACAACATCAGCTCCGAGGGGTGATCAGCATATTGGATGGGTGTTCCTTCAGGGTGACCAATTTTGACATGATTGAAGGGGTCGATGTTTACTGGTGGGGGGCTCATGGGGATGATTTTGAGAATTTGACTAGTGGGTTTATTTTATCAGAGGAGAAGCTGAATAAAACCTATAGACATT

Fln Alignment:

AllPine_a_c36143___SNCTLNSSMVGFSADFEMVQHQLRGVISILDGCSFRVTNFDMIEGVDVYWWGAHGDDFENLTSGFILSEEKLNKTYRH
F6H3I9________________SGCSKTSPLLHFESDIEMVQHQLRGLIKVLDDCSFRVSEFDMLPGSDVHWWGAAGPDFANLTSGFVIADDKLNKTYKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain