SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104701

Length: 539 nt

UniGene Fasta

>sp_v3.0_unigene104701
ATGGGAGGGGATAAATGATACCTGAATCCCTTCGGCCAGACATAGGGGATGTCCCGAGCACACTGGTGTGAAGAAATGGGTTTAAAAAAGGGACCGTGGACACCTGAGGAAGATCGAATACTTATCTCTTACATAAAAAAGAATGGCCATGGAAAGTGGCTTGCACTGCCGAAACAAGCAGGACTTAGCCGATGCGGGAAGAGTTGTCGACTGCGGTGGACAAACTATCTGAGACCCAACATAAAACGTGGGAACTTTAGTCTCAAGGAGGAACAGACTATCATTCAACTGCATCAAATCCTCGGAAACCGATGGTCAACTATTGCCTCGCACCTCCCTGGAAGAACAGACAATGAGATAAAGAATGTATGGAACACTCGTTTGAAAAAGCGCCTCCCGCAAACTGGTGTGGACCTAGCAAACTACGTTCCCAGAAAATGCAATATATCTTGCTTTGACGGCGCTGTGAGTGTCTGTGACAGTCATGAGAAGGATACCGATCATCAGTTCCAAAGCCATGGCTGCACGTCCGAATCAGC

Ace file of the UniGene sp_v3.0_unigene104701

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB2 [Daucus carota]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	MYB transcription factor	-	-	8.725e-32	-

Source	Gene names
Sma3	117M18_17; 23.t00069; 40.t00054; 46C02.19; 80A08_26; AT4g21440; ATR1; At1g06180; At1g16490; At1g34670; At1g56160; At1g79180; At2g31180; At3g01140; At3g02940; At3g13540; At3g23250; At3g61250; At4g05100; At4g17785; At4g21440; At4g22680; At4g28110; At5g10280

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	tryptophan biosynthetic process	GO:0000162	Biological Process	-
Sma3	cell morphogenesis	GO:0000902	Biological Process	-
Sma3	defense response to insect	GO:0002213	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	induced systemic resistance, ethylene mediated signaling pathway	GO:0009866	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	cellular response to sulfur starvation	GO:0010438	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02940.1	MYB107, AtMYB107 myb domain protein 107 chr3:662141-663830 FORWARD LENGTH=321	70%
RefSeq	Arabidopsis thaliana	NP_186944.1	myb domain protein 107 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002307080.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSI2

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 163 - 481

Fln protein: MSRAHWCEEMGLKKGPWTPEEDRILISYIKKNGHGKWLALPKQAGLSRCGKSCRLRWTNYLRPNIKRGNFSLKEEQTIIQLHQILGNRWSTIASHLPGRTDNEIKNVWNTRLKKRLPQTGVDLANYVPRKCNISCFDGAVSVCDSHEKDTDHQFQSHGCTSES

Protein Length: 164

Fln nts: ATGGGAGGGGATAAATGATACCTGAATCCCTTCGGCCAGACATAGGGG_-_ATGTCCCGAGCACACTGGTGTGAAGAAATGGGTTTAAAAAAGGGACCGTGGACACCTGAGGAAGATCGAATACTTATCTCTTACATAAAAAAGAATGGCCATGGAAAGTGGCTTGCACTGCCGAAACAAGCAGGACTTAGCCGATGCGGGAAGAGTTGTCGACTGCGGTGGACAAACTATCTGAGACCCAACATAAAACGTGGGAACTTTAGTCTCAAGGAGGAACAGACTATCATTCAACTGCATCAAATCCTCGGAAACCGATGGTCAACTATTGCCTCGCACCTCCCTGGAAGAACAGACAATGAGATAAAGAATGTATGGAACACTCGTTTGAAAAAGCGCCTCCCGCAAACTGGTGTGGACCTAGCAAACTACGTTCCCAGAAAATGCAATATATCTTGCTTTGACGGCGCTGTGAGTGTCTGTGACAGTCATGAGAAGGATACCGATCATCAGTTCCAAAGCCATGGCTGCACGTCCGAATCAGC

Fln Alignment:

AllPine_a_c35797___MSRAHWCEEMGLKKGPWTPEEDRILISYIKKNGHGKWLALPKQAGLSRCGKSCRLRWTNYLRPNIKRGNFSLKEEQTIIQLHQILGNRWSTIASHLPGRTDNEIKNVWNTRLKKRLPQTGVDLANYVPRKCNISCFDGAVSVCDSHEKDTDHQFQSHGCTSES
C0PSI2________________MGRAPRCDEMGLKKGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVTHAPRGYNVSSCYAAVSIRDHHGEQADHHLQSHGCTSES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain