SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104618

Length: 422 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104618
TAGGGTTTGCATTGCAGAGGCAGGCGCCATACCTTTGCTTGTGTCGCTGCTGTCTTCACAGGATCCCAAAGCTCAAGAAAATGCTGTAACTACAATCCTAAATTTATCTATTTGTGAGGGAAACAAAGCTAAAATAATGGAATCTGGTGCATTACAGCCAATCACCAATGTTGTCAGATATGGATGCAGTATGGAAGCTAGGGAGAATGCGGCTGCAACGCTCTTCAGCCTTTCATCTGTTGATGAATATAAGAAATTAATTGGAGAGAGGCCAGAAGCCATTCCAGCCTTGGTAAATCTGCTTCGGGATGGAACTGTCAGAGGCAAAAGAGACGCAGTTACTGCCTTGTTTAATCTTTCAGTTTTTCATGGAAATGTTGCGCGGGTAATAGAAGCTGGTGCAGTTCCTCTGCTCGTTAATA

Ace file of the UniGene sp_v3.0_unigene104618 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Protein spotted leaf 11; AltName: Full=Cell death-related protein SPL11 sp\|Q0IMG9.2\|SL11_ORYSJ RecName: Full=E3 ubiquitin-protein ligase SPL11; AltName: Full=Cell death-related protein SPL11; AltName: Full=Protein spotted leaf 11 gb\|AAT94160	-	-	5.0e-38	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	E3 ubiquitin ligase PUB14, putative	-	-	1.297e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	2.353e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		2.353e-16	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		2.353e-16	%

Source	Gene names
Sma3	ACRE276; ARC1; At1g23030; At1g29340; At1g71020; At2g23140; At2g28830; At3g01400; At3g46510; At3g54790; At3g54850; At4g16490/dl4270c; At5g01830; At5g42340; At5g58680; At5g58680/mzn1_130; At5g67340; B1065E10.53; F10G19.3; F12A12.30; F15D2.34; F15H11.22; F23

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54850.1	ATPUB14, PUB14 plant U-box 14 chr3:20321524-20323848 FORWARD LENGTH=632	4.06377e-44	61%
RefSeq	Arabidopsis thaliana	NP_191045.2	U-box domain-containing protein 14 [Arabidopsis thaliana]	6.02558e-44	61%
RefSeq	Populus trichocarpa	XP_002316197.1	predicted protein [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 140 - 497

Fln protein: RVCIAEAGAIPLLVSLLSSQDPKAQENAVTTILNLSICEGNKAKIMESGALQPITNVVRYGCSMEARENAAATLFSLSSVDEYKKLIGERPEAIPALVNLLRDGTVRGKRDAVTALFNLSVFHGNVARVIEAGAVPLLVN

Protein Length: 141

Fln nts: TAGGGTTTGCATTGCAGAGGCAGGCGCCATACCTTTGCTTGTGTCGCTGCTGTCTTCACAGGATCCCAAAGCTCAAGAAAATGCTGTAACTACAATCCTAAATTTATCTATTTGTGAGGGAAACAAAGCTAAAATAATGGAATCTGGTGCATTACAGCCAATCACCAATGTTGTCAGATATGGATGCAGTATGGAAGCTAGGGAGAATGCGGCTGCAACGCTCTTCAGCCTTTCATCTGTTGATGAATATAAGAAATTAATTGGAGAGAGGCCAGAAGCCATTCCAGCCTTGGTAAATCTGCTTCGGGATGGAACTGTCAGAGGCAAAAGAGACGCAGTTACTGCCTTGTTTAATCTTTCAGTTTTTCATGGAAATGTTGCGCGGGTAATAGAAGCTGGTGCAGTTCCTCTGCTCGTTAATA

Fln Alignment:

AllPine_a_c35671___RVCIAEAGAIPLLVSLLSSQDPKAQENAVTTILNLSICEGNKAKIMESGALQPITNVVRYGCSMEARENAAATLFSLSSVDEYKKLIGERPEAIPALVNLLRDGTVRGKRDAVTALFNLSVFHGNVARVIEAGAVPLLV
C0PSB5________________RLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHG-STEARENAAATLFSLSVVDENKVIIGASG-AIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain